KEGG   Alpha proteobacterium HIMB5: HIMB5_00013090
Entry
HIMB5_00013090    CDS       T02250                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase Fpg
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
apm  Alpha proteobacterium HIMB5
Pathway
apm03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:apm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HIMB5_00013090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:apm03400]
    HIMB5_00013090
Enzymes [BR:apm01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     HIMB5_00013090
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     HIMB5_00013090
DNA repair and recombination proteins [BR:apm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     HIMB5_00013090
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS NFACT_N DUF4905
Other DBs
NCBI-ProteinID: AFS48047
UniProt: J9YYC2
Position
complement(1200392..1201255)
AA seq 287 aa
MPELPEVEIVRLSLSKNIIGKKINKVLIRNRNLRFKLKFSFEKHLKNKFVINIYRFSKYL
IIELNDKSFCIIHLGMSGTIHILKKNKKNIYTNTSFYHSPGLPKKHNHVEISFNDLTLVY
NDPRRFGFFQIVKNKENLTNRFKNYGPEPFDKNFNLDYMANYFKDKKKDIKSFLLDQKFV
SGIGNIYANEILYLSKINPKIPVKKLKKTQFKLLIKNSKKVLLNAIKKGGSTIRDFKNTL
GDTGNFQKEFKVYGRQKLNCLRSNCTGVITKIVQSNRSTFLCKFCQK
NT seq 864 nt   +upstreamnt  +downstreamnt
atgccagaattaccagaagtagaaattgtacgtctatcattatcaaaaaatataattgga
aaaaaaatcaataaagttttgataagaaatagaaacttaagatttaagttgaagttttct
tttgaaaaacatttaaaaaataaatttgttataaacatttatagattttcaaaatatttg
attattgagctaaatgacaaaagtttctgcatcatacacctaggcatgtctggaactatt
catattttaaaaaaaaataaaaaaaacatatataccaatactagtttttatcattcacct
ggtttgccaaaaaaacataatcatgttgaaatttcctttaatgatttaactttagtttac
aatgatcctagaagatttggtttttttcaaatagtcaaaaataaagaaaatctcacaaat
agatttaaaaattatggaccagagccttttgataaaaactttaatttagattatatggcc
aattattttaaagataaaaaaaaagatattaaaagttttttattagaccaaaaatttgta
tcaggtattggtaacatctatgcaaatgaaattttgtatttatcaaaaattaatcctaaa
attccagtaaaaaaattaaaaaaaactcagtttaaacttttaataaaaaattcaaaaaaa
gttttattaaatgcgatcaaaaagggtggatccacaataagagattttaaaaatacttta
ggagatactggaaattttcaaaaagaatttaaggtgtatggaaggcaaaaacttaattgt
ttaagatcaaattgtactggtgtaattactaaaattgtccaatcaaatagatcaactttt
ctttgcaaattttgtcaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (1114)   
   KEGG ORTHOLOGY (1)   
   RefGene (1111)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (1127)   

Download RDF
DBGET integrated database retrieval system