KEGG   Auxenochlorella protothecoides: F751_4055
Entry
F751_4055         CDS       T04132                                 
Name
(RefSeq) Replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03030  DNA replication
apro03410  Base excision repair
apro03420  Nucleotide excision repair
apro03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    F751_4055
   03410 Base excision repair
    F751_4055
   03420 Nucleotide excision repair
    F751_4055
   03430 Mismatch repair
    F751_4055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apro03032]
    F751_4055
   03036 Chromosome and associated proteins [BR:apro03036]
    F751_4055
   03400 DNA repair and recombination proteins [BR:apro03400]
    F751_4055
DNA replication proteins [BR:apro03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    F751_4055
  DNA Replication Termination Factors
   ELG1-RFC complex
    F751_4055
Chromosome and associated proteins [BR:apro03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    F751_4055
DNA repair and recombination proteins [BR:apro03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     F751_4055
  Check point factors
   HRAD17(Rad24)-RFC complex
    F751_4055
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 AAA_14 AAA_11 AAA_16 AAA_22 AAA_5 RuvB_N AAA_assoc_2 ResIII AAA_24 DUF815 nSTAND3 AAA_18 DEAD AAA_28 AAA_3 AAA_7 AAA_19 AAA_25 ARTD15_N FtsK_SpoIIIE bpMoxR Mg_chelatase AAA_30 ATPase_2 cobW Viral_helicase1 RNA_helicase
Other DBs
NCBI-GeneID: 23615446
NCBI-ProteinID: XP_011401940
UniProt: A0A087ST37
Position
Unknown
AA seq 327 aa
MVVTSETPWSEKYRPQTLDEVAFHKDIIDTIKKLLNENQLPHLLLYGPPGTGKTSTILAL
ARQMYGPGAANMVLELNASDDRGIGIVRNEIQDFAGTRSIFNNKFKLIILDECDAMTRDA
QMALRRVMEKYVRNARFCLICNFVSKIIPALQSRCTRFRFQPLPPSFVTERLTSICALEK
VPTTPEGLEALVQLGEGDMRRVLNLLQSVVMSAGEVSEVSAYTCAGRPLPADIESAMHWL
LNEPLTAAMEKLTDLQRSKGVALVDILQALHPFVFRIGMPPEVRIELVRSLASVEHRLAF
GTSEKLQLGAVVGAFAAAKAGIVASAS
NT seq 984 nt   +upstreamnt  +downstreamnt
atggtggtcacgagtgagacgccatggagcgagaagtacaggccacagactctggacgaa
gtggccttccacaaggatataattgacacgatcaagaagcttctgaatgagaaccagctg
ccgcacctgctgctgtacgggccgccaggcacggggaagacctccaccatactggcactg
gctcggcagatgtacggcccaggggctgctaacatggtgctggagctgaacgcctcagat
gaccgtggcatcggcatcgtgcggaacgagatccaggactttgcagggacacggagtatc
ttcaacaataaattcaagctgatcatcctggatgagtgtgacgcaatgacacgggacgcc
caaatggctctgaggagagtgatggagaagtatgtgagaaatgcccgcttctgcctcatc
tgtaactttgtgagcaagatcatcccagcgctgcagtcacgctgcacacgcttccgcttc
cagcccctcccgcccagcttcgtgacggagcgcctcacctccatctgcgccctcgaaaag
gtgcccacgacgcctgaggggctggaagccctggtccagctcggagagggcgacatgcga
cgcgtgctcaatcttttgcagtcggtggtgatgtcggcaggcgaggtcagcgaggtcagc
gcctatacatgcgctgggcggcccctcccggcagacatagagagcgcgatgcactggctc
ctcaacgaacccctgaccgcagcgatggagaagctgacggatctgcagcggtccaaggga
gtggcactggtagacatcttgcaggccctccacccgttcgttttcaggattgggatgccg
cccgaggtgaggatcgagctggtgcggagcctggcgtcggtggagcacaggctggccttc
gggaccagcgagaagttgcagctgggggcggtggtgggggcatttgccgccgccaaggcc
ggcatcgtcgccagcgccagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (31)   
   Pfam (31)   
All databases (47)   

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