KEGG   Auxenochlorella protothecoides: F751_5277
Entry
F751_5277         CDS       T04132                                 
Name
(RefSeq) Poly(A)-specific ribonuclease PARN
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F751_5277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apro03019]
    F751_5277
Enzymes [BR:apro01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     F751_5277
Messenger RNA biogenesis [BR:apro03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     F751_5277
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 23616668
NCBI-ProteinID: XP_011400948
UniProt: A0A087SQD7
Position
Unknown
AA seq 454 aa
MPTIRDAIDHASFVAVDCEMTGLFDYEPKPWYLDDMQTRYEDVCGVAANAQKFGLIQIGL
AAFAPSLTGLGWASSLEFLSGCGFDFNKCIRHGVPYMTAVARDARLARVAREASAKERAS
QQPLIQLTAQRDIDFKEDFLARVRDWLASDTEEALLLPSSNSFQRAVQHQELRRPQFGAP
DPPGFHVEVVKGPSGYNQLRLVKADPEVAAAARAAATSKAQADIHAAAGFTAVLEMLRGA
GKPVVGHNAFFDLAFILSSFATQLPPSLRAFKELVRAWFPAGFWDTKHLACQLQAAQPAA
APEDTSLGALYADLEARAAGGVASDPGEGGLIQTAPLPTVGHSVTFDRYDFAGASMLAHE
AGYDAFMTGAVFARLAVLLGGAETVQAALPALAALRGRLNVTRSDYAYINLEGPDPEPRR
PKVLWVSGFEAGSLTGGSLARCGDWRLGFAGCGE
NT seq 1365 nt   +upstreamnt  +downstreamnt
atgcccaccatccgtgatgccatcgaccatgcctcctttgttgctgtggactgcgagatg
actggcctgtttgactacgaacccaagccatggtacctggacgacatgcagacccgctat
gaggatgtatgtggggtcgctgccaatgcacagaagtttgggctcatccagatcggcctg
gcggcctttgccccgagcctcacgggcctgggttgggcctcctccctggaattcctgtct
ggctgtggctttgacttcaataaatgcattcgccacggcgtgccatacatgacagctgtg
gccagagacgcgaggcttgcacgtgtggctcgagaggccagcgccaaggaacgtgcctcc
cagcagcccctgatccagctgacggcccagcgagacatcgacttcaaggaagacttcctc
gcccgcgtcagggactggctggcgtccgacacggaggaggcgctgctgctgcccagcagc
aactctttccagcgagcggtgcaacaccaggagctgcggcggccccagtttggggcgccc
gacccgcccggcttccatgtggaggtggtcaaggggcctagcggctacaaccagctgcgg
ctggtcaaggcagacccggaggtagcggcggcggccagggctgccgcgacgtccaaggcg
caggctgacatccatgccgcggcaggcttcacggcggtgctggagatgctgaggggcgct
ggaaagcctgtggttggccacaacgccttcttcgacctggccttcatcctttcctccttc
gccacccagctgccccccagcctccgggccttcaaggagctggtgcgcgcctggttcccc
gccggcttctgggacaccaagcacctcgcctgccagctccaggccgcgcagccagcggca
gcgccggaggacacgagcctgggggcgctctatgccgatctggaggccagggccgcgggc
ggcgtggcaagtgatcccggtgaagggggcctcatccagaccgcgccgctgcccaccgtg
ggccacagcgtcacgtttgatcgctacgactttgcgggtgcctcgatgctggctcatgag
gccggctacgacgccttcatgacgggcgcggtctttgcccgcctggccgtgctgctgggc
ggcgcagagacggtgcaggcggccctccccgccctggccgccttgagggggcgcctcaat
gtcaccaggtctgactacgcctacatcaatctggagggtcccgaccccgagcctaggcgg
cccaaagtgctgtgggtgtctggattcgaggccggcagtctcaccggaggaagcctggca
cggtgtggtgactggcgactgggtttcgctggttgtggcgagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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