KEGG T05625: D1815

Aquimarina sp. AD1: D1815_08115

Entry

D1815_08115       CDS       T05625

Symbol

rlmD

Name

(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

aqa Aquimarina sp. AD1

Brite

KEGG Orthology (KO) [BR:aqa00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:aqa03009]
    D1815_08115 (rlmD)
Enzymes [BR:aqa01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     D1815_08115 (rlmD)
Ribosome biogenesis [BR:aqa03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    D1815_08115 (rlmD)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_31 Met_10 Methyltransf_25 MTS Methyltransf_15 Cons_hypoth95 Methyltransf_11 PCMT TRAM PrmA N6_N4_Mtase Methyltransf_2 FtsJ Methyltransf_12 UPF0020 Methyltransf_4 Methyltrans_SAM

Other DBs

NCBI-ProteinID:

AXT55715

UniProt:

A0A3A9WZX5

Position

1795134..1796546

AA seq 470 aa
MARKNKRQVFENIEVIDAGAKGKSIAKAPDGKIIFLNNAVPGDVVDIQTTKKRKAFYEGT
ATTFHKKSDKRVQPLCSHFGTCGGCKWQFMGYEHQLNYKEQEVINNLTRLGKIELPEVTP
ILGSEDQFLYRNKMEFSFSDSRWLTLDEIQSDTEIKNRNALGFHIPGMWDKILDIDKCHL
QEDPSNAIRNKIKTFATENDLSFYNARKQSGFLRTLMMRIVSTGEIMVLVQFFHEDVEKR
TLLLDYIVSEFPEITSLQYVINSKGNDTIYDQKVICYHGKDHIEEEMEGLRFKINAKSFY
QTNSKQAYELYKVTRDFAGLTGNELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADA
KENAKHNNIDNVEFYVGDMKKVFTSDFIATHGQPEVVITDPPRDGMHKDVVGQLLNISPN
KIVYVSCNSATQARDLSLLDSAYKVTKVQPVDMFPQTHHVENVVLLEKRS

NT seq 1413 nt +upstreamnt +downstreamnt
atggcaagaaagaataaaaggcaagtttttgaaaatatagaagtgattgatgctggtgca
aaaggaaaaagtattgctaaagctcctgatggaaaaatcatatttctaaataacgcagta
cctggagatgttgtggatattcaaaccactaaaaaacgaaaagctttttatgaaggaacg
gcaactacttttcataaaaaatctgacaaacgtgtccaacctctttgttctcattttggt
acttgtggtgggtgtaaatggcagtttatggggtacgagcatcaactaaactataaagag
caggaagttataaataacctaactagattaggaaaaattgagttaccagaagtaactcca
atactaggttctgaagatcaattcctttacagaaataaaatggagttttcttttagtgat
agtcgttggttaacattagatgaaatccaaagtgacacagaaattaaaaatagaaatgct
ctagggtttcacatccctggaatgtgggataaaattttggatatagacaaatgtcattta
caagaggatcctagtaatgctattcgaaataaaataaaaacatttgctacagaaaatgat
ttatcattttataatgcgagaaagcaaagtggtttccttcgcactcttatgatgagaatt
gtatctaccggagaaattatggtgttagttcaattttttcatgaagatgtagaaaaacga
accttattattagattacatagtttctgaatttccagaaattacatcattacaatatgta
attaactctaaaggaaatgatacaatttatgaccagaaagtaatctgttatcacggaaaa
gatcatatcgaagaagaaatggaaggtttacgttttaaaattaacgcgaaatctttctat
cagaccaactccaagcaagcttatgaattgtataaagtaacacgagatttcgctggtcta
acgggaaatgaattagtatatgatttatatacaggaacgggtactattgctcaatttgta
gcaaaaaaggcaaaaaaagtaattggtgtagaagctgtgccagaagctattgctgatgca
aaagaaaatgctaagcataataatatcgataacgtagaattttacgtaggagatatgaaa
aaagtatttacttcggattttatagctactcatggacaaccagaagttgtaattactgat
ccaccaagagatggaatgcataaggatgtggtaggacagttacttaacatttctcccaat
aagattgtgtatgttagttgtaacagtgcaacacaagctagagatttgtcgttattagat
agtgcatataaggttactaaagtgcaacctgtagatatgtttccacaaacacaccatgta
gaaaatgtggtactacttgaaaagagaagttaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (27)   

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