KEGG   Rhizobium rhizogenes K84: Arad_2980
Entry
Arad_2980         CDS       T00850                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ara  Rhizobium rhizogenes K84
Pathway
ara03030  DNA replication
ara03410  Base excision repair
ara03420  Nucleotide excision repair
ara03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ara00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Arad_2980 (ligA)
   03410 Base excision repair
    Arad_2980 (ligA)
   03420 Nucleotide excision repair
    Arad_2980 (ligA)
   03430 Mismatch repair
    Arad_2980 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ara03032]
    Arad_2980 (ligA)
   03400 DNA repair and recombination proteins [BR:ara03400]
    Arad_2980 (ligA)
Enzymes [BR:ara01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Arad_2980 (ligA)
DNA replication proteins [BR:ara03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Arad_2980 (ligA)
DNA repair and recombination proteins [BR:ara03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Arad_2980 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Arad_2980 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     Arad_2980 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Arad_2980 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 HHH RNA_ligase Lar_restr_allev
Other DBs
NCBI-ProteinID: ACM27036
UniProt: B9JH39
Position
1:complement(2361441..2363594)
AA seq 717 aa
MSSEQKPVEDLTEEEAAAALAYLAAEIARNDALYHGNDAPEISDAEYDALKRRNDAIEAR
FPALVRADSPSRRVGAAPSETFMPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRMVSAATRGDGTTGENVTANIRTIKEIPQTLPAGAPAV
VEIRGEVYMAKSDFLALNAQMEAEGKQSYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSDMPADTQFGMVQAFGEWGFPVNPLMKRLNSVADILAHYDEIGLQRPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQALTRLLDIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNADYIKGIGNKGEPIRDGRDIRIGDMVIVQRAGDVIPQIVDVVLEKREA
SSVAYEFPKTCPVCGSHAVRDINEKTGKVDAVTRCTGGFICRAQATEHLKHFVSRNAYDI
EGLGSKQIDFFFESDDPALQVRTAPDIFTLERRQQSSLSKLENIDGFGKVSVSKLYAAIN
ERRDIALHRFIFALGIRHVGETTAKLLARSYGTYEAFEAGMKEAAPLAGDAWNDLNNIEG
VGEVVARAVVEFYKEPRNVEVISKLLDEVRPQEAEQPTTSGSPVVGKTVVFTGSLEKFTR
DEAKAKAESLGAKVSGSVSKKTDIVVAGPGAGSKLDKAREFNVQVMTEDEWLELIGG
NT seq 2154 nt   +upstreamnt  +downstreamnt
atgagcagcgaacagaagcccgtcgaagatttgaccgaagaagaggcagccgctgcgctt
gcctatctggccgccgagatcgcgcgcaatgacgcgctttatcacggcaacgacgcaccg
gagatttcggatgcggaatatgacgcgctgaagcggcgcaacgatgccatcgaagcgcgt
tttccagcactcgttcgcgccgacagcccatcgcggcgggtcggtgccgcgccgtccgaa
accttcatgcccgtcgtgcacgcacggccgatgctgtcgctcgacaataccttctcgcag
gaagacgtgcaggatttcgtcgccggcgtctatcgcttcctcggccggttgcccgaccag
tcgatcgccttcaccgccgagccgaagatcgacgggctctccatgtcgatccgctatgag
aatggccggatggtgagtgcggcgacgcgcggcgacggcacgaccggcgaaaacgtcacg
gccaatatccgcaccatcaaggagatcccacagaccctgccggctggcgcacctgcggtc
gtcgagatacgcggcgaggtctatatggccaagagcgatttcctggcgctgaacgcgcaa
atggaagcggagggcaagcagagctatgtcaatccgcgcaacaccgcagccggctcgctg
cgccagctcgacgccaaggtcaccgccagccgcaagctgaaattctttgcttatgcctgg
ggagagatgtccgacatgccggccgacacgcagttcggcatggtgcaggcgttcggggaa
tggggttttccagtcaatccgctgatgaagcggttgaattcggttgccgatattctcgcc
cattatgacgagatcggcctgcagcgtccggacctcgattatgatatcgacggcgtcgtc
tacaaggtcgacagtcttgaattgcaggcgcgccttggtttccgctcgcgttcgccgcgc
tgggcgacggcacacaaattcccggccgaacaggcgctcactcggttgctcgatatcgac
atccaggtcggccgcacaggggctctgacgccggttgcgcgactggagccgattacggtc
ggcggcgtcgtggtgaccaatgcgacgctgcacaatgccgactacatcaagggcatcggc
aataagggtgagccgatccgcgatggccgcgatatccgcatcggcgacatggtgatcgtg
cagcgcgccggcgacgtcattccgcagatcgtcgacgtcgtgctggagaagcgggaggca
tcgagcgtcgcctatgaattccccaagacatgcccggtctgcggcagccatgcggtgcgc
gatatcaatgagaagaccggcaaggtcgatgcggtgacgcgctgcaccggcggcttcatt
tgccgggcgcaggcgacggagcatctgaagcatttcgtctcgcgcaatgcctatgacatc
gaggggctcggttcgaagcagatcgatttcttcttcgaaagcgacgacccggcgctacag
gtgcgtaccgcgcccgatattttcaccctggagaggcggcagcagtcgtcgttgagcaag
ctggagaatatcgacggcttcggcaaggttagcgtttccaagctctatgcggccataaac
gagcggcgcgatatcgccctgcatcgcttcatcttcgcgctcggcattcgccatgtcggc
gagacgacggcaaagctcttggcgcgctcctatggcacctatgaggcttttgaggcgggg
atgaaggaggcggccccgctcgcgggtgacgcgtggaacgacctcaacaatatcgagggt
gtcggcgaggtggtcgcccgcgccgtcgtcgagttctataaggagccgcgcaacgtcgag
gtgatctcgaagctgcttgacgaggtaaggccgcaggaggcggaacagccgaccacatcg
ggtagcccggtcgtcggcaagacggtggttttcaccggctcgctggaaaaattcacccgc
gacgaagccaaggccaaggctgaaagtcttggagccaaggtctccggctcggtctcgaaa
aagaccgacatcgtggtggcgggaccgggcgccggctcgaagctggacaaagcgcgggag
ttcaacgtgcaggtcatgactgaggatgaatggctggaactgatcggcgggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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