KEGG   Rhizobium rhizogenes K84: Arad_3338
Entry
Arad_3338         CDS       T00850                                 
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
ara  Rhizobium rhizogenes K84
Pathway
ara03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ara00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Arad_3338 (rhlE2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ara03019]
    Arad_3338 (rhlE2)
Messenger RNA biogenesis [BR:ara03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Arad_3338 (rhlE2)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Helicase_RecD AAA_22 UTP25 Flavi_DEAD DUF4688 CMS1
Other DBs
NCBI-ProteinID: ACM27320
UniProt: B9J7Z9
Position
1:2666322..2667992
AA seq 556 aa
MVRPGLFALAPPKGIELTDFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIG
LAQTGTGKTAAFGLPIIEMLLKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRKTAL
RINVVVGGASINKQQLQLERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDL
GFIHDLRKISKMVPAKRQTMLFSATMPKTIADLAAEYLTNPVKVEVSPPGKAADKVEQYV
HFVSGQNHKTEILKESISANPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQ
RERALKGFRDGEVRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEARLLRDIERLMGIEIAVASGEAPADRGRPARGNNRAGGRGGQGQGQGRGG
AGQGRAEGRPARPARRPHREGEAGEARAHNGERQERRPQRENNRNADFRGQRRDERAPRP
EVDNDLASTSDFRPAKKPQHNGAANEAGAHRGPRHAHGRPTGRHEDRGQNAQGEQRKDGG
MKRRGPGNGGQRRERA
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggtgcgacccggcctatttgctttggcgcccccgaaaggtattgaattgaccgatttt
cactcgcttggtctctccaagcagatcgtcgatacgctgtcgcagaacaacttcgcgacg
ccgacgccgatccaggcacaggctatcccgcttgtcctgcagggccgcgacctcatcggc
ctcgcccagaccggcaccggcaagaccgccgctttcggcctgccgatcatcgaaatgctg
ttgaaggacgccaagcgtcccgataaccgcaccgtccgtacgcttatcctcgcccccacc
cgcgaactggtgaaccagatcgccgacaacctcaagctcttcgtccgcaagacggcgctg
aggatcaacgtcgtcgtcggtggcgcctcgatcaacaagcagcagctgcagctcgagcgc
ggcaccgacattctcgtcgccacccccggccgtctgctcgacctcatcagccgccgcgcc
ctgtcgctcggccaggtgagctacctcgtcctcgacgaagccgaccagatgctcgacctc
ggcttcatccacgatctgcgcaagatctccaagatggtcccggccaagcgccagaccatg
ctgttctcggccaccatgccgaagacgatcgccgatctcgctgccgaatatctgaccaac
ccggtcaaggtcgaagtgtcgcctccgggcaaggccgccgacaaggtggaacagtatgtc
cacttcgtttctggccaaaaccacaagaccgagatcctgaaggaaagcatttccgccaat
ccggatggccgcgccatggtcttcctgcgcacaaagcacggcgccgagaagctgatgaag
catctcgaacacgtcggctttgcagccgcctcgatccacggcaacaagagccaaggtcag
cgcgagcgcgccctgaagggcttccgtgacggcgaagtccgcgttctcgtcgccaccgac
gtcgccgcacgcggcatcgacatccccggcgttacgcatgtctataactacgacctaccg
gaagtgccggacgcctacgtccaccgcatcggccgtaccgcacgcgccggccgcgacggc
atcgccatcgcgttctgtgctcccgacgaagcccgcctgctgcgcgacatcgagcgcctg
atgggcatcgaaattgccgttgccagcggcgaagccccggccgatcgtggccgtccggct
cgcggcaacaaccgcgcaggcggtcgtggtggtcagggccaaggccagggtcgtggcggc
gcaggtcagggacgtgccgaaggccgccccgctcgtccggcccgtcgtcctcatcgcgaa
ggtgaagccggcgaagcccgcgcccataacggcgagcgccaggaacgtcgtccgcagcgc
gaaaacaatcgcaatgccgacttccgtggccagcgccgcgacgagcgcgccccgcgtccg
gaagtagacaacgatctcgcatcgacgtccgattttcgcccggccaagaagccgcagcac
aatggcgcggcaaacgaagccggcgcccatcgcggtccccgccacgctcacggccgtccc
acgggtcgccatgaagaccgtggccagaacgctcagggcgaacagcgcaaggacggcggc
atgaagcgccgcggccccggcaatggcggccagcgccgcgaacgcgcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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