KEGG   Arcobacter sp. L: ABLL_0411
Entry
ABLL_0411         CDS       T01834                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
arc  Arcobacter sp. L
Pathway
arc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:arc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABLL_0411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:arc03021]
    ABLL_0411
   03019 Messenger RNA biogenesis [BR:arc03019]
    ABLL_0411
Transcription machinery [BR:arc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ABLL_0411
Messenger RNA biogenesis [BR:arc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ABLL_0411
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 Spore_III_AA AAA AAA_22 OB_RNB AAA_16
Other DBs
NCBI-ProteinID: BAK72286
UniProt: G2HSX5
Position
388819..390147
AA seq 442 aa
MEESKEETKVKTTNSKKTRTHIPVEGYKIEQLRELPLEELINIANELDVENPQELKRQDL
MFTILKSQIDAGGFILFTGILEIKEGGFGFLRAIDGNFSDTSNDSYVSATQIRKFALRTG
DIVSGQVRPPNKESEKYNALLKIEAINYLPVKESKNRPLFDNLTPLYSTSRFNFEYDSQK
MTGRMLDLFAPMGKGQRGLIVAPPKTGKTELLKELAHAISRNHPEVTLMVLLIDERPEEV
TDMQRSVRGEVYSSTFDLPAQNHVRVAEIVIEKAKRLVEMKKDVVILLDSITRLARAYNT
VTPSSGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIISTALIETGSKMDEVIFEEFK
GTGNSEVVLSRNAANKRVYPALDIIKSGTRKEELLLSPDVLQKTWILRNAISQMDEVEAL
KFLYSKMLKTKNNEEFFNSMNE
NT seq 1329 nt   +upstreamnt  +downstreamnt
atggaagagtctaaagaagaaacgaaagtaaaaacaacaaattcaaaaaaaacaagaact
catatccctgttgaaggttataaaatagaacaactaagggaacttcctttagaagaatta
attaatatagcaaatgaactagatgttgaaaatcctcaagaattaaaacgacaagattta
atgtttacgattttaaaatctcaaatagatgcaggcggatttattttatttacaggtatc
ttagagattaaagagggcggatttggttttttaagagcaattgatggaaatttttcagat
acttcaaatgattcttatgtaagtgcaactcaaattagaaaatttgcattaagaactgga
gatatcgtctcagggcaagttagacctccaaataaggagagtgaaaaatataatgcttta
ttaaaaatagaagctataaattacttacccgtaaaagagtctaaaaatagacctttattt
gataacttaactccactttattctacatcacgatttaattttgaatatgattcacaaaaa
atgacaggaagaatgcttgacctttttgcaccaatgggaaaaggacaaagaggacttatt
gtagctcctccaaaaacaggtaaaactgaacttttaaaagaattagcacatgcaataagt
agaaatcatccagaagttactttgatggttcttttaattgatgaaagacctgaagaagtt
actgatatgcaaagaagtgtaagaggtgaagtttattcttcaacttttgatttacctgct
caaaatcacgtaagagtcgcagaaattgttattgaaaaagcaaaaagacttgttgaaatg
aaaaaggatgttgtaattttacttgattctattactcgacttgctcgtgcttataatact
gtaacaccaagttctggaaaagttctttctggtggagttgatgctaatgctttacataaa
ccaaaaagattttttggagctgcaagaaatatagaagagggtggtagtttaactattatt
tctactgcacttattgaaacaggttcaaaaatggatgaagttatttttgaagagtttaaa
ggtacaggaaatagtgaagttgttcttagtagaaatgctgcaaataaaagagtttatcct
gctcttgatattattaaatctggaacaagaaaagaagaactgcttttaagtccagatgtt
ttacaaaaaacttggattttaagaaatgcgatttctcaaatggatgaagttgaagcactt
aaatttttatattcaaaaatgctgaaaacaaaaaataatgaagagttttttaactcaatg
aatgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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