KEGG   Psychromicrobium lacuslunae: UM93_09835
Entry
UM93_09835        CDS       T03775                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ari  Psychromicrobium lacuslunae
Pathway
ari03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ari00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    UM93_09835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ari03021]
    UM93_09835
   03400 DNA repair and recombination proteins [BR:ari03400]
    UM93_09835
Enzymes [BR:ari01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     UM93_09835
Transcription machinery [BR:ari03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     UM93_09835
DNA repair and recombination proteins [BR:ari03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      UM93_09835
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Cluap1 DUF4407
Other DBs
NCBI-ProteinID: AJT41739
UniProt: A0A0D4BZJ6
Position
complement(2098906..2102805)
AA seq 1299 aa
MSSESTFGLMQIGLATADDIRDWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEEARHAELPNLQAEHDLEKKQLVDTRDADIAGIARDLEGE
LSKLEGEGAKAADKKKARDSADRQMANVRKRADADIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGLYFEGSMGAEAIKKRLENFDMEAESEALRDVIQNGKGQRKTRALKRLKVVN
AFLTTKNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRVGSAGEGR
IFASQSEAIMAHDAGELHLNSTVKIRLNNFVPNAEWEAPEGWEAGQPVLVETSLGQVIFN
DTLPADYPWVEKVADKGQLSEIVNDLAERYPKVVVAATLDNLKDAGFYWATRSGVTVAIS
DIEVPAAKPAILEGYEVKAAKVQSQFEKGLIADDERRQELIDIWNQATNDVADAMRKSLS
AANTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREDDCGTERGLTLPIAVPDANGELVMHE
EVENSVYARTLATEVTDAKGKVLAEAGADVGDVLIAELFAAGVTDVKVRSVLTCESAVGT
CAQCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSAGRGEDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEETERQMRLVLTPDDGSEEIAYPVLRRARLLVAD
GDRVEVGQKLVQGAVDPKQVLRILGPRAAQKHLVEEVQGVYRSQGVGIHDKHVEVIVRQM
LRRVTVIESGESELLPGELAERGRFEAENRRVVSEGKKPASGRNELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTDITVEPTEEAKAN
LFTAPSAFSDFDYAGVGGDLTPEFHAIPLDDYDLGADFR
NT seq 3900 nt   +upstreamnt  +downstreamnt
atgtccagcgaatctacattcgggctgatgcaaatcggtctggccactgcggatgatatc
cgtgactggtctttcggcgaggtgaagaagccggaaactattaattaccgtaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggaccttcccgtgactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgctaaggtgcgtcgtgagcggatgggccacattgaactggctgctccg
gtgacccacatttggtacttcaaaggcgtgccgtcgcgtctgggctacttgctcgacctg
gcgccgaaggacctggagaaggtcatctacttcgctgcctacatgatcaccagcgttgat
gaggaagctcgtcacgctgagttgccgaacctgcaggccgagcatgacctggagaagaag
cagctcgttgatacccgggatgccgatatcgccggcatcgctcgtgacctggaaggcgag
ctgagcaagctcgaaggcgaaggtgctaaggcagccgataagaagaaggcccgcgattcc
gctgaccgtcagatggcgaacgtgcgcaagcgtgccgatgccgatattgagcgccttgaa
caggtctgggatcgtttcaagaatcttaaggtcgctgatctggaaggtgacgagggactc
taccgcgaattgcgtgaccgctacggtctgtacttcgaaggttcaatgggtgccgaggca
atcaagaagcgcctggagaacttcgacatggaggccgagtccgaggccctgcgcgatgtt
attcagaacggcaagggtcagcgcaagacccgtgcgctgaagcgcctcaaggtggtcaat
gcgttcctgaccaccaagaacagcccgctcggcatggtgctcgacgccgtcccggtgatc
ccgccggaactgcgcccgatggtgcagctcgacggtggccgtttcgctacctcggacttg
aacgacctctaccgccgggtgatcaaccggaacaaccgactcaagcgcttgcttgatctg
ggagctccggaaatcattgtgaacaacgaaaagcggatgctgcaggaagcagttgacgcg
ctcttcgacaacggtcgtcgtggccgtccggtgaccggtccgggtaaccgcccgctgaag
tcgttgagcgatatgctcaagggcaagcagggtcgtttccgtcagaacctgttgggcaag
cgtgttgactactcgggccgttcggtcatcgtggttggtccgcagctcaagctgcaccag
tgtggtctgcctaagcagatggcgcttgaactcttcaagcccttcgtgatgaagcgcctg
gttgacctcaaccacgcgcagaacatcaagagcgctaagcggatggttgagcgttaccgc
ccgcaggtttgggatgtgctggaagagatcatcaccgagcacccggtattgctgaaccgt
gcaccaactctgcaccgtttgggtatccaggccttcgagcctcagttggtggaaggtaag
gctatccagcttcacccgctggtttgtggtgctttcaacgccgacttcgacggtgaccag
atggcagttcacctgccgctgagccccgaagctcaggctgaagctcgcatcctgatgttg
tcctcgaacaacatcttgaagccctccgacggccgtccggtcaccctgccttcgcaggat
atgatcatcggtctctaccacttgaccaccaagcgggtcggctcggccggtgaaggtcgc
atctttgcttcgcagtccgaggcaatcatggcgcacgacgccggtgagttgcacctgaac
tcgaccgtcaagattcgtctgaacaacttcgtgcctaacgcggagtgggaagctcccgag
ggttgggaagccggtcagccggtgctggtcgaaacctcgctcggacaggtcattttcaat
gacaccctgcccgctgattacccctgggttgaaaaggttgccgataagggccagctctcc
gagatcgtgaacgatctggccgaacgttacccgaaggttgttgtggcggcaacgctggat
aacctgaaggatgccgggttctactgggcaacccgctcgggcgtcaccgtggcgatctcc
gatattgaggtgcccgctgctaagccggccatcctcgaaggttatgaggtcaaggccgcc
aaggtgcagtctcagttcgagaagggcttgattgctgacgacgagcgtcgtcaggagctc
atcgacatctggaaccaggcaaccaacgacgttgctgacgcgatgcgtaagagcctgtcc
gcggccaacacgattaaccggatggtttcctccggtgctcgtggtaactggatgcaggtt
cgtcagatcgccggtattcgtggtctggtggctaacccgaagggtgagattattcctcgt
ccgatcaagtcctcctaccgtgagggcctgtcggtgctggaatacttcatcgccacccac
ggtgcccgtaagggtcttgccgataccgctctgcgtaccgctaactcgggttacctgacc
cgtcgtctggtggacgtctcgcaggacgtcatcgttcgcgaagacgattgcggtaccgag
cgtggtctgacgctgccgatcgcggtgccggatgccaacggtgaactggtgatgcatgag
gaggtcgagaacagcgtttacgctcgcactctggccaccgaggtcaccgatgccaagggc
aaggtgctggccgaggccggcgccgacgtcggcgatgtgctgatcgcggaactattcgcg
gctggcgtcaccgacgtcaaggttcgctccgtgctcacttgtgagtccgctgtcggtacc
tgtgctcagtgctacggtcgttcgctggccaccggcaagctcgtcgacattggtgaggct
gttggcatcattgccgcacagtccatcggtgagcccggtactcagctgaccatgcgtacc
ttccacaccggtggtgctgtttcggccggtcgtggcgaggacatcacccagggtctgccc
cgtatccaggagctcttcgaagcacgtaccccgaagggtgtcgcgccgatcgctgaagct
gctggccggatcaccatcgaagagaccgagcggcagatgcgtctggtgcttactccggat
gatggcagcgaggaaatcgcctacccggtgctgcgtcgtgcgcgtctgctggttgccgat
ggtgaccgcgtcgaggtcggccagaagctcgtgcagggtgctgtcgatcctaagcaggtg
ctccgtattctcggcccgcgtgccgcgcagaagcacctggttgaggaagtccagggcgtt
taccgtagccagggtgtgggtatccacgacaagcacgtcgaggttatcgtccgccagatg
ctgcgccgcgtcacggtgatcgaatccggtgaatcggaactgctgcccggcgagcttgcc
gagcgtggccgcttcgaggctgagaaccgtcgggtcgtctcggaaggcaagaagccagct
tctggccgtaacgagctgatgggcatcaccaaggcctcgctggctactgagtcgtggctc
tccgccgcgtccttccaagagaccacccgggtgctcacccaggcggcaatggaaggcaag
tcggatccgctgctgggtctgaaggagaacgtgatcatcggtaagctgatcccggccggt
accggtctgccgcgctacaccgatatcacggtggagcccacggaagaggcaaaggccaat
ctgttcaccgcaccgagcgcgttcagcgacttcgactatgccggagtcggtggcgatctc
actcccgagttccatgccatccccttggatgactacgacctgggtgctgacttccgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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