KEGG T04078: AFL94

Arthrobacter sp. LS16: AFL94_09565

Entry

AFL94_09565       CDS       T04078

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

arl Arthrobacter sp. LS16

Pathway

arl03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:arl00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AFL94_09565
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arl03019]
    AFL94_09565
   03009 Ribosome biogenesis [BR:arl03009]
    AFL94_09565
Enzymes [BR:arl01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     AFL94_09565
Messenger RNA biogenesis [BR:arl03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AFL94_09565
Ribosome biogenesis [BR:arl03009]
Prokaryotic type
  rRNA processing factors
   AFL94_09565

SSDB

Motif

Pfam:

RNase_E_G

Other DBs

NCBI-ProteinID:

ALD64129

Position

complement(2084164..2087028)

AA seq 954 aa
MTLAELNAAAGVEDTQYRWRATRRTQVSTPDSSKRASRQADRRAQSARSAAADEAVNEQA
AKQQAAEAAASEQAQDSAGETVEAAAPAASLETVEAIAQAAIEAEAHAEPEDRTGALLAE
HGNTMIMNPFAIPESAHSVLAQAVAKKTRTTPRPEAEEQSEGEDVTSRRRRRRRRGDVDL
ELEGGSQDDPPNTVTRVRAPRAGIESHASVNNKVASVRGSTRLEAKRQRRRESRETGRRR
QVITEAEFLARRESVERKMIVRQREDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKV
QNVLPSMEAAFVDIGRGRNAVLYAGEVNWDVAGLEGQPRRIENALKAGDSVLVQVTKDPV
GHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERQRLKKILKDHLPENAGVIVRTA
AEGASEEELTNDINRLRAQWEGIEEQSTSTKTLAPELLYSEPDLTIKVVRDVFNEDFTKL
IVSGEQAWDTIEAYVMYVAPDLMGRLEKWEQDEDIFANYRVDEQIAKALDRKVFLPSGGS
LVVDRTEAMTVIDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFID
MVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEECEHCAG
AGVITHEEPVESRKSFNSHGESHSKKYAEKSSRNRRRRGGDKDESKPVEQEHTEVVEEKT
EATRHALANIAAASHLDHPAEHAVKIGDDEVPMPKHVETGSADSSLTLESLEAALPEGEG
QGEQSDSGRKPRRRSRSRGRNRGQDEQQGAESQAEEQQAAAEPENAAEQVSSKPARSRSR
RASRPQEASSGEQPALTGLALPASQAPVAEQTAAPAAPAAASAAPQSSTKPKRRSRRATS
VQGDANAAVEVVEVSAATGSVVQMDTASSRAEKPAEPAGAPVMFGVGVPVRELK

NT seq 2865 nt +upstreamnt +downstreamnt
atgaccttggcagagctgaacgccgctgccggcgtcgaggatacccagtaccgctggcgg
gccacccgccgcacccaggtgtccacccctgactccagcaagcgcgccagccgccaggcc
gaccgccgcgcccagagcgcgcgcagcgcagccgccgacgaggcagtgaacgagcaggcc
gccaagcagcaggcagccgaggccgccgcttccgagcaggcgcaggattcggccggcgaa
accgtcgaggcggccgcaccggcggcttcgctggaaaccgtcgaggccatcgcccaggca
gccatcgaggccgaggcgcacgccgagcccgaagaccgcaccggcgcgttgctggccgag
cacggcaacaccatgatcatgaacccgtttgcgatccctgaatcggcccactcggtgctg
gcccaggccgtcgcgaagaagacccgcaccacgccgcgccctgaagccgaggagcagtcc
gagggcgaagacgtcacctcgcgccgccgtcgtcgccgccgccgcggagacgtggacctg
gaactcgaaggcggctcgcaggacgatccgccgaacaccgtcacccgtgtccgcgccccg
cgcgccggcatcgaaagccacgccagcgtgaacaacaaggtcgcctcggtgcgcggttcc
acccgcctggaagccaagcgccagcgccgccgcgaatcccgcgagaccggccgccgccgc
caagtgatcaccgaggccgagttcctggcgcgccgcgagtcggttgagcgcaagatgatt
gtgcgccagcgcgaggaccgcatccagatcggcgtgctggaagacggcgtgctcgccgag
cacttcgtgtccaagacccagcaggattcgctgatcggcaacgtctacctgggcaaggtg
cagaacgtgctgccgtccatggaggccgccttcgtggacatcggacgcgggcgcaacgcc
gtgctgtacgccggcgaggtcaactgggacgtggcaggcctcgaaggccagccgcgccgc
atcgagaacgccctgaaggccggcgactcggtcctggtgcaggtcacgaaggacccggtg
ggccacaagggcgcccgcctgaccagccaggtctccctgccgggccgctacctggtgtac
gtgccgggcggctccatgaccggcatctcccgcaagctgcccgacgtcgagcgccagcgc
ctgaagaagatcctgaaggaccacctgccggagaacgccggcgtgatcgtgcgcaccgca
gcggaaggcgcctcggaagaggagctgaccaatgacatcaaccgcctgcgtgcccagtgg
gaaggcatcgaggagcagtcgacctcgaccaagaccctggcccctgagctgctgtactcc
gagcctgatctgaccatcaaggtcgtccgcgatgtcttcaacgaggacttcaccaagctg
atcgtctctggcgagcaggcctgggacaccatcgaggcctacgtcatgtacgtggcgccg
gatttgatgggtcgcctggagaagtgggagcaggacgaggacatcttcgccaactaccgc
gtggacgagcagatcgccaaggcgctggaccgcaaggtcttcctgccttcgggcggttcg
ctggtggtcgaccgcaccgaagccatgacggtgatcgacgtgaacaccggcaagttcacc
ggttcgggcggcaacctcgaagagaccgtcaccaagaacaacctggaagcggccgaggaa
gtcgtgcgccagctgcgcctgcgcgacatcggcggcatcatcgtcatcgacttcatcgac
atggtccttgaatcgaaccgcgacctggtgctgcgccgactggtcgagtgcctgggccgc
gaccgcaccaagcaccaggtggccgaggtgaccagcctgggcctggtgcagatgacgcgc
aagcgcatgggcaccggcctgctggaagtcttcggcgaggagtgcgagcactgcgccggc
gcgggtgtcatcacccacgaggagcctgttgaatcccgcaagtccttcaactcgcatggc
gagagccattcgaagaagtacgccgagaagtcttcgcgcaaccgccgccgccgcggcggg
gacaaggacgagagcaagccggtagagcaggagcacaccgaggtcgtcgaggagaagacc
gaagccacgcgccatgccctggccaacatcgccgcggcctcgcacctggatcacccggcc
gagcacgcagtgaagatcggcgacgacgaggttccgatgccgaagcacgtcgagaccggc
tccgccgactcgtccctcaccctggaatcgctggaagcagcgctgccggaaggcgaagga
cagggcgagcagtccgactccgggcgcaagccacggcgccgctcccgttcccgcggccgc
aaccgcggccaggatgagcagcagggagccgagtcccaggccgaagagcaacaggctgcc
gccgagccggagaacgcagcagaacaggtttcctcgaagcctgcccgcagccgttcgcgc
cgcgcctcgcgtccgcaggaggcctcctcgggggagcagccggccctgaccggcctggcc
ctgccggcttcccaggcccccgttgctgagcagaccgcagcacctgctgcgcctgccgcc
gcttcggcggccccacagagttccaccaaaccaaagcgacgcagccgtcgggccacctcg
gtccagggcgatgcgaacgcggcggtggaagtggtcgaggtatccgctgctaccggttcg
gtagtccagatggataccgccagttcacgggctgaaaagcctgccgaaccggccggtgct
ccggtcatgttcggtgtcggagttccggtccgcgaactgaaatag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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