KEGG   Rhizobium rhizogenes K599: B0909_03230
Entry
B0909_03230       CDS       T04767                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
aro  Rhizobium rhizogenes K599
Pathway
aro03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    B0909_03230 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aro03021]
    B0909_03230 (rpoB)
   03400 DNA repair and recombination proteins [BR:aro03400]
    B0909_03230 (rpoB)
Enzymes [BR:aro01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     B0909_03230 (rpoB)
Transcription machinery [BR:aro03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     B0909_03230 (rpoB)
DNA repair and recombination proteins [BR:aro03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      B0909_03230 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DOCK-C2
Other DBs
NCBI-ProteinID: AQS61384
UniProt: A0AA86LGK3
Position
1:complement(1668085..1672221)
AA seq 1378 aa
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK
SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEDILSTFYTKASYER
DGDGWRIPFQPETLKNAKVVTDMIDADTGEVVVEAGKKLTPRLIRQLSEKGLKALKATDE
DLYGNYLAEDIVNYETGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNT
LSADKNENRQEALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKVTNDVIYLSAMEEAKYYVAQANAPLNDDGSFSEEFVVSRHSGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
SVGDAISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWW
MFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQRFDDDSLVKLAEEAKRG
VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIENQPEDQLPDAAE
NT seq 4137 nt   +upstreamnt  +downstreamnt
atggctcagaccctttcgtttaacggtcgcaggcgcgtacgcaagtttttcggcaaaatt
ccagaagtagcggaaatgccgaacctcatcgaggttcagaaggcttcgtatgaccagttt
ctcatggttgacgagcccaagggtggccgtcccgacgagggattgaatgccgtattcaag
tccgtattcccgatcaccgatttctcgggcgcctccatgctcgaattcgtatcctacgag
ttcgaagcgccgaagttcgacgtcgaggaatgccgtcagcgcgatctgacctatgcagcg
ccgctgaaagtgacgctgcgcctcatcgtgttcgatattgacgaggatacaggcgcgaag
tccatcaaggacatcaaggaacagtccgtctacatgggcgacatgccgctcatgaccaat
aacggcacgttcatcgtcaacggtaccgagcgcgtcatcgtttcgcagatgcaccgttcg
ccgggcgtgttcttcgaccacgacaagggcaagagccattcttccggcaagcttttgttc
gctgcccgcgtcatcccgtatcgcggttcctggctcgatatcgagttcgacgccaaggac
atcgtctatgcgcgtatcgaccgtcgccgcaagctgcccgtgacctcgctcctgatggcg
ctcggcatggatggcgaagacattctgtcgaccttctacaccaaggcttcctatgagcgc
gacggcgacggctggcgcattccgttccagcccgagacgctgaagaacgccaaggtcgtc
accgacatgatcgacgccgataccggcgaagtcgttgtcgaggccggcaagaagctgacc
ccgcgccttatccgccagctttccgaaaagggcctcaaggcgctgaaggcgaccgacgag
gacctgtacggcaactatctggccgaagacatcgtcaactacgagacgggcgaaatctat
ctcgaagccggcgacgaaatcgatgagaagacgcttggtcttatcctgcagtccggcttt
gacgagattccggttctcaacatcgaccacgtcaatgttggcgcctacatccgcaacacg
ctgtctgccgacaagaacgaaaaccgtcaggaagccctgttcgacatctaccgcgtcatg
cgtccgggtgagccgccgaccatggaatcggcggaagcgatgttcaactcgctgttcttc
gatgcagagcgttacgacctttcggccgttggccgcgtcaagatgaacatgcgtctcgac
ctcgacgcggaagacaccgtgcgcacgctgcgcaaggaagacatcctcgcggtcgtcaag
atgctggtcgaactgcgtgacggcaagggcgagatcgacgatatcgacaacctcggcaac
cgtcgtgtgcgttcggtcggcgagctgatggaaaaccagtatcgtctcggccttctgcgc
atggaacgtgcgatcaaggaacgtatgtcctcgatcgaaatcgacaccgtgatgccgcag
gacctgatcaacgcgaagccggctgctgccgccgttcgtgaattcttcggttcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggctcttggaccgggtggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtt
cacccgacccattacggccgtatttgcccgatcgaaacgccggaaggcccgaacatcggt
cttatcaacagcctcgcgaccttcgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgcaagatcgtggacggcaaggttacgaacgacgtgatctatctctccgccatggaa
gaggccaagtattacgtcgcgcaggccaacgcgccgctcaacgacgatggttcgttctcc
gaagagttcgtcgtttcccgtcattcgggcgaagttatgctcgccccgcgtgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgcagcggctctcattccgttc
ctggaaaacgacgacgccaaccgcgctctcatgggctcgaacatgcagcgtcaggccgtt
ccgcttctgcgggcggaagcgccgttcgtcggcacgggcatggaaccggttgttgctcgc
gactccggcgctgccatcgcagctcgccgcggcggtgtagtcgaccaggtggatgcgacg
cgtatcgttatccgcgctacggaagacctcgatgccggcaagtcgggcgtcgatatttac
cgtctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtt
tccgtcggtgacgccatctccaagggtgacatcatcgcggacggtccgtcgaccgacctc
ggcgatctggcgcttggccgcaacgcgctcgtcgcgttcatgccctggaacggctacaac
tacgaagactcgatcctgatgtcggaacgtatcgtttccgacgacgtgttcacctccatt
cacatcgaagaattcgaagtgatggcgcgcgacacgaagcttggtccggaagaaatcacg
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtt
tacatcggtgcggaagttcagccgggcgatatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcc
gacgttcgcgacacctccatgcgcatgcctccgggcacgtttggtacggtcgtcgaagtc
cgcgtcttcaaccgtcacggtgtggagaaggacgagcgcgcgatggctatcgagcgcgaa
gagatcgaacgtctggcgaaggaccgcgacgacgaacaggcaattcttgaccgtaacgtc
tacggccgtctgatcgacatgctgcgtggccacgtttccatcgccggtccgaagggcttc
aagaagggcgtcgagctttccaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgttcgcggtcgaagacgagaaggctcagtccgaactcgaagcgcttcgcggccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgatgaaatgcctccgggcgtcatgaagatggtcaaggtcttcgttgctgttaagcgc
aagatccagccgggcgacaagatggccggccgtcacggtaacaagggcgtcgtctcgcgt
atcgttccggtcgaggacatgccgttcctcgaagacggcacgcatgtcgacatctgcttg
aacccgctcggcgtgccttcgcgcatgaacgtcggccagatcctcgaaacccacctcgca
tgggcatgcgcaggcatgggcaagaagatcggcgagatgctcgaagagtatcgcaagacg
atggacatcagcgagcttcgcagcgagctgacggaaatctacgcgtctgaagccaatgac
gaggttcagcgtttcgacgacgactcgctggtgaagcttgccgaagaagccaagcgcggt
gtttccatcgcgaccccggtcttcgacggtgcgcatgagcctgacgtcgccgcgatgctg
aagaaggcaggtctgcatgaatccggtcagtccgtcctttatgacggtcgtaccggtgag
ccgttcgaccgcaaggtcaccgtcggctacatgtacatgatcaagctgaaccaccttgtc
gacgacaagatccacgctcgctcgatcggtccttactcgctcgttacccagcagccgctg
ggcggcaaggcgcagttcggcggacagcgcttcggggaaatggaagtctgggctctggaa
gcatacggcgcggcctacacgctgcaggaaatgctgaccgtcaagtcggacgacgtggcc
ggccgcaccaaggtctacgaagcgatcgtccgtggcgacgataccttcgaggccggtatt
ccggagagcttcaacgttctcgtcaaggaaatgcggtcgctcggtctttcggtcgaactg
gaaaactcgaagatcgagaaccagcccgaagaccagctgcccgacgcggcggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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