KEGG   Candidatus Arthromitus sp. SFB-mouse-Japan: SFBM_0503
Entry
SFBM_0503         CDS       T01591                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
asf  Candidatus Arthromitus sp. SFB-mouse-Japan
Pathway
asf03410  Base excision repair
asf03430  Mismatch repair
asf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:asf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SFBM_0503 (recJ)
   03430 Mismatch repair
    SFBM_0503 (recJ)
   03440 Homologous recombination
    SFBM_0503 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:asf03400]
    SFBM_0503 (recJ)
DNA repair and recombination proteins [BR:asf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     SFBM_0503 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     SFBM_0503 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SFBM_0503 (recJ)
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1
Other DBs
NCBI-ProteinID: BAK56281
UniProt: F9VJH3
Position
544668..546440
AA seq 590 aa
MLERWILRNRNTLIEGIEKLEVSSKLLKILINRDFKNFDDMRSYMYPSEVLLNDPFELKD
FQKVIDILISLIESGDKIRIVGDYDVDGIISVYILYTTFKNIGIDADFVIPDRVKDGYGI
NKKIVSEAKNDGVKVLITCDNGIAAIDVIKFAKENDLIVIVTDHHDIQIIHGEDGNCDRV
LPDADAILNPKQDECAYKFKKLCGAGICFKLCSELYKKFGLEYKIDDLIEVTAIATICDV
VDLEDENRFLAKKGIELLRSTNNIGLNAIIDINSISRENISSYEIGYIIGPCLNALGRLE
SGMKGLDLLLCDDNDKVYELASEIKDLNDRRKSMTLDGFIECLNIVMDEGYFNSDIIVVY
NENIHESIAGIIAGRIKERFYKPTIVLTKGEEICKGSARSIEGINIFDLISENRDILETF
GGHPMAAGLSIREENINLFRDRLNSSNRIDKEKYLNTVYIDIFCPIQDIDYDFVRDLDKL
EPFGKSNPKPIIGDKRLRLYSIKRIGKNRNYISMKLISRDNKIFDFVYFGYADEFDKSFS
NYYSRVDLEKLYSGRCNMNSQFFIDVLYEVKIDNYNFSETIKYFLLKYRF
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgttagagcggtggattttgagaaatagaaataccttaatagaagggatagaaaagctt
gaagtatctagcaagcttttaaagatactcattaatagagattttaaaaattttgatgat
atgagaagttatatgtatccgagtgaggttttattaaatgatccatttgaattaaaagat
tttcaaaaggttattgatattttgatttcattaattgaaagtggagataagataagaatt
gttggcgattatgatgttgatggtataattagtgtctacatattatatacaacttttaag
aatattggaattgatgctgattttgtaatacctgatagggttaaagacggttatggaata
aataaaaagatagttagtgaggctaaaaatgatggagttaaggttttaataacgtgtgat
aatggtatagctgctattgatgttataaagtttgcaaaagagaatgatttaattgtaatt
gttacggatcatcatgatattcaaattatacacggtgaagatggaaattgtgatagggtt
ttgcctgatgctgatgcgattttaaatccaaagcaagatgagtgtgcatataagtttaaa
aaactttgtggagctggtatttgttttaagctttgttctgagctatataagaagtttggg
ttagaatataagatagatgatttgatagaggtaactgctattgcaactatttgtgatgtt
gttgatttggaagatgaaaatagatttttagcaaagaagggtattgagttattaagatca
acaaataatattggcttgaatgctataattgatataaattctatatcaagagaaaatatt
tcttcgtatgagataggttatataattggtccttgtttgaatgcacttggaaggcttgag
agtggtatgaagggactagatttattattgtgtgatgacaatgataaggtttatgaactc
gcatcagaaataaaggatttaaacgatagaaggaagtctatgactttggatggttttatt
gagtgtttaaatatagttatggatgaaggatacttcaattcagatataattgttgtttat
aatgaaaatattcatgaaagcatagcgggtataattgctggaaggattaaggaaaggttt
tataagcctacaattgttttaacaaaaggtgaggaaatttgtaaaggatcggctaggtca
attgagggaataaatatttttgatttaatttctgaaaatcgagatatacttgagacattt
ggaggtcatcctatggctgcaggattatctattagagaagaaaatataaatttatttaga
gatagattgaattcatcaaatagaattgataaggagaagtatttaaatactgtgtatatt
gatatcttttgtccaattcaggatatagattatgattttgtcagagatttggacaaactt
gagccatttggaaaatcaaatccaaaaccaattattggtgataaaaggttaagattatat
tccatcaaaagaattggtaaaaataggaattatatttctatgaaattaatttcgagggat
aacaaaatttttgattttgtttattttggatatgctgatgaatttgataaatcatttagt
aattattattcaagagttgatctcgagaaactatattctggaagatgtaatatgaacagt
caattttttattgatgttttatatgaagttaagatagataattataattttagtgagacg
ataaagtattttttattaaagtatagattttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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