KEGG   Candidatus Arthromitus sp. SFB-mouse-Japan: SFBM_0717
Entry
SFBM_0717         CDS       T01591                                 
Name
(GenBank) DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
asf  Candidatus Arthromitus sp. SFB-mouse-Japan
Brite
KEGG Orthology (KO) [BR:asf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:asf03032]
    SFBM_0717
   03400 DNA repair and recombination proteins [BR:asf03400]
    SFBM_0717
Enzymes [BR:asf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     SFBM_0717
DNA replication proteins [BR:asf03032]
 Prokaryotic type
  DNA Topoisomerases
   SFBM_0717
DNA repair and recombination proteins [BR:asf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SFBM_0717
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim Zn-ribbon_8 Zn_ribbon_recom zf-GRF Toprim_4 Zn_Tnp_IS1595
Other DBs
NCBI-ProteinID: BAK56489
UniProt: F9VJM5
Position
770962..773016
AA seq 684 aa
MAKYLVIVESPAKAKTIKKYLGLNYEVVASMGHIRDLPKSRLGVSVEDDYEPNYINVRGK
ADLIKSLKKASKKSEKVFLATDPDREGEAISWHLAYILGIDVDDKCRVEFNEITKTTIKN
SIKNARSINLNLVNAQQARRVVDRLVGYGISPILWKTVKPKLSAGRVQSAALKLICDREN
EINSFEVKQYFTIEGSGKKNSKKYVFKLHSKHKEKLDELTENKVLEILDELSEGKYIVDE
IKEGSKNKYPSPPFTTSTLQQEAYKKLNFQTKRTMSVAQSLYEGVEVKGYGVVGLITYMR
TDSVRLSADSLNQANEFVAKVYGDKYKLDIPRQYGKNNKNIQDAHEAIRPTNVEITPDIA
KQTLKDDQYKLYSLIWRRFLASQMRNAVYNTMAISIKNGDYLFKLNGSQLQFDGFLKVYE
VDKDDKDLILPAFEEGEELKNVKVESIEHFTQPPPRYTEASFVKLLEEKSIGRPSTYVPT
ISTLFDRMYLKRQNKQFVPTELGIIVNDLIKNNFTEIVDIEFTADMEKKLDGIEEGKASW
KSIVHEFYKPLKEKIDIAENTVKKVVIEDEVTDVLCDKCGRNMVKKHSRYGVFLACPGYP
ECKNTKSIIQKLNIPCPKCGGEINVRKSKKGKVFYGCSKYPECDFISWNEPSNVKCPKCG
GITVKKIKRKQEFYECIDQDCKDK
NT seq 2055 nt   +upstreamnt  +downstreamnt
atggcaaaatatttagttatcgttgaatcgccagcaaaagctaagactataaaaaaatat
ttgggattgaattatgaagttgtagcatcaatgggacatattagagatttgcctaagagt
cgattaggagtatctgttgaagatgattatgaaccaaattacataaatgttaggggaaaa
gctgatttaattaaatcacttaaaaaggcttctaaaaagagtgaaaaagtttttttagca
actgacccagatagggaaggtgaggctatatcttggcatttagcttatatattagggatt
gatgttgatgataaatgtagagttgaatttaatgaaataacaaaaacaaccataaaaaac
tctattaaaaatgctagaagtattaatttgaatttagttaatgctcagcaggctagaaga
gtagtagatagattagttggatatggtataagtcctattttatggaaaacagtgaagcct
aagttgagtgctggtagggtgcagtccgcggctctgaagttaatatgtgatagagaaaat
gaaataaatagttttgaagttaaacaatattttacgatagaaggcagtggaaaaaagaat
tctaagaaatatgtgttcaaacttcattctaagcacaaggaaaaattggatgaattaaca
gaaaataaagttttagaaatattagatgagttgtccgaaggaaagtatattgtagatgaa
ataaaggaaggctcaaaaaataagtatccatcaccaccttttactacaagtacccttcag
caagaggcttataagaaattaaattttcagacaaagaggactatgtctgttgctcagtca
ctatatgagggagttgaggttaaaggatatggagttgtaggattaatcacttatatgaga
acggattctgttagattatcggctgattctttaaatcaagcaaatgaatttgtggctaaa
gtatatggagacaaatataaacttgatataccgaggcaatatgggaagaataataaaaat
attcaagatgcacatgaagctataagacctaccaatgtagaaattacaccagatattgca
aagcaaactttaaaagatgatcagtataagttatattctctaatatggagaagatttttg
gcaagtcagatgcgtaatgctgtatacaatacaatggctattagtataaaaaatggagat
tatttatttaaattaaatggatctcagttgcaatttgatggatttttgaaagtttatgaa
gttgataaggatgataaagacttaatacttccagcatttgaagaaggggaagaattaaag
aatgttaaagtggaaagtatagaacatttcacacaaccacctccaagatataccgaagca
tcttttgttaaattattggaagaaaaatctataggaagaccaagtacttacgttccaact
ataagtactcttttcgatcgtatgtatttaaaacgtcaaaataaacaatttgttccaaca
gaattaggaattatagtcaatgatttaataaaaaataattttacagagattgttgatata
gaatttacagctgacatggaaaaaaaattagatgggatagaagaaggtaaagcaagttgg
aaaagtatagttcatgagttctataaaccactaaaagaaaaaattgatatagccgagaat
acagttaagaaggttgtgattgaagacgaagttactgatgttttatgtgataaatgtggg
cgtaatatggttaaaaaacatagtagatatggtgtttttctagcatgtccaggatatccg
gaatgtaaaaatactaagtctattattcaaaaattgaacattccatgtcctaaatgtggt
ggggaaatcaatgttaggaagagtaaaaaaggaaaagtattctatggatgcagtaagtat
cctgaatgtgattttatatcatggaatgaaccgagcaatgttaagtgtcctaaatgtggt
ggtattacagttaagaaaattaaaagaaaacaggagttctatgaatgtattgatcaagat
tgtaaagataaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (36)   

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