KEGG   Alligator sinensis (Chinese alligator): 102380424
Entry
102380424         CDS       T02922                                 
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
asn  Alligator sinensis (Chinese alligator)
Pathway
asn03008  Ribosome biogenesis in eukaryotes
asn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asn00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    102380424 (XRN1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102380424 (XRN1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asn03019]
    102380424 (XRN1)
   03009 Ribosome biogenesis [BR:asn03009]
    102380424 (XRN1)
   03016 Transfer RNA biogenesis [BR:asn03016]
    102380424 (XRN1)
   03036 Chromosome and associated proteins [BR:asn03036]
    102380424 (XRN1)
Messenger RNA biogenesis [BR:asn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102380424 (XRN1)
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     102380424 (XRN1)
Ribosome biogenesis [BR:asn03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    102380424 (XRN1)
Transfer RNA biogenesis [BR:asn03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    102380424 (XRN1)
Chromosome and associated proteins [BR:asn03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    102380424 (XRN1)
SSDB
Motif
Pfam: XRN_M XRN_N XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer DUF6003
Other DBs
NCBI-GeneID: 102380424
NCBI-ProteinID: XP_025064229
UniProt: A0A3Q0GWU1
Position
Unknown
AA seq 1736 aa
MGQSFESHCLYPCAFSAFIVLGVAIRSDEEIPEFDNLYLDMNGIIHQCSHPNDDDVHFRI
SDDKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKA
LDKGETLPSEARFDSNCITPGTDFMARLHEHLKYFVNMKISTDKSWQGVTIYLSGHETPG
EGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKS
QRACAPEETTFHLLHLSLMREYIDYEFSPVKDKISFEFNIERIIDDWILMGFLVGNDFIP
HLPHLHINHDALPLLYRTYMAILPELDGYINENGHLNLKRFQKYLTKLSDFDREHFSEVF
VDLKWFESKVGNKYLNEAAGVAAEEARNSKQKKQKAQENSICLAALEKTEDIITGTCKIS
EVLEDEPEDDDLFETEFRQYKRTYYMTKMGVDIVSDDFLADQAECYVQAIQWILHYYYHG
VQSWSWYYPYHYAPYLSDIRNISKLKIQFELGKPFMPFEQLLAVLPAASKDLLPKCYQHL
MTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIEEKRLLQAMESCNKCLMEEERQRN
THSGCLMYCLDRDTEFKYPSPWPEKFPAIERCCTRYKTIALDAWHVEITHNKITKINKSA
LYFCGFPTLKHIKHKFYLKKNGVQVFQQSSHGENMMLDIVIDEDSKEQTVENVSSLVLGK
SVFVNWPHLEEARVVVVSDGETKFYLEEPHGTQKLYLGNAMPPTKVAYVGDKEQNIWLKE
VQGITEHYQRRKGIIVNKTSVVVYAQLLTGRRYQLNQSGDVYLEKQWSKQVLPFVYQTVV
KDIKAFDSHFSNIKTLDDLFPPGSTVFMLGSPYYGCTGEVQDSCDVITEGRIRVVFSIPC
EPQLDALIQNQHKYSVKYNPGYVLASRLGISGYLVSRFTGSIFIGRGSRKNPHGDHKANV
GLNLKFNKKNEEVPGYTKKVGNEWMYSSSVEQLLAEYLERVPELFSYIAKNSQEDIFFED
DIWPGEDENGAERVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKIPEQR
KSNKKVRVTVKPHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIK
GANRETDVLFEVLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGNRSETGNQKLTAIVK
PQPAVNQYNSYSSDPSSVCSQKVHLGGLNHSPRSLFVPTRARSKQDDEFCSIWQSLQGSG
KSQPVQQNIHAKGTILPQEAKPGAGNQFYKPGFSENSLKGQQKKQEPFKKFKEDSKGLRN
EGSSQKIPTKQSFSGGNKYNVKLLKRNESPNVPVLQKATVDGPCIAGKKDIELESLLASL
KISKESEEQLSYSKEERATNEEHLSPQSFVMKGTQMLKEILKIDGSDAENKNEVKLLINE
VPASSYRQDSHGPASQHRQAKKIAAYMNKPYNIGGPQNPQVLDAGGHPFLGPQSTPVSEL
SRICSLVGMSQPDFSFLRTPQTMMVCQVKLSNGLLIHGPQCQSESEAKEKAALFALQRLS
SVGVNFPLPPAPPMFSNYQPVGASLSPGSVPPVFTQPTANIMPSSSHMFNPMPWGAPVPI
HGKPYYPGSYQGNMPLTGTVPVGTHNQFIPLQVTKKRAASKKNFEFKEFQVSPQAAPLKN
EQPMSSDHIQQDNSTTLKAAQDNVAMSSVPHSKPNASSKRKARKLAVNFGVPKSSE
NT seq 5211 nt   +upstreamnt  +downstreamnt
atgggccagagttttgaatcccactgtttatatccatgtgctttcagtgccttcattgta
ttaggtgtggctataaggagtgatgaagagattccagaatttgacaacttgtacctggac
atgaatggtatcatccatcagtgttcacaccctaatgatgatgatgttcacttcagaatt
tcagatgataagatctttgctgatatttttcactacttggaagtattatttcgtattatt
aagccaagaaaggttttctttatggcagttgatggagtggctccaagagcaaaaatgaac
cagcagcgtgggagacgttttaggtcagcaaaagaggcagaggacaaaattaaaaaggct
ttagataaaggagaaactctcccatcagaagccagatttgactccaactgcattacacca
ggcactgatttcatggcgaggttgcacgaacatctgaagtattttgtaaatatgaagatt
tccacagacaaatcctggcaaggcgtaactatctacttatcaggccatgagactccaggt
gaaggagaacataaaattatggaatttatcagatcagagaaagcaaagcctgatcatgat
ccaaacacgagacactgtctttatggcttagatgctgacttgattatgcttggattaaca
agtcatgaggcacatttctctctcttaagagaagaggtcaggtttggtggcaaaaaatct
cagagagcatgtgcaccagaagaaactacgtttcacttactacacttgtcattaatgagg
gaatatattgactatgagttttcaccagtcaaagacaagatttcctttgaatttaacatt
gaaaggataatagatgattggattctaatgggatttcttgtaggcaatgactttatccct
catctacctcatttacatattaatcacgatgcactgcctctgctttatagaacttatatg
gctattttgccagaacttgatggttacatcaatgaaaatggacatttaaacttaaaacgc
tttcagaaatatcttacaaaattgtcagattttgatcgtgagcacttcagtgaagtcttt
gtagacctaaaatggtttgaaagcaaagtaggcaataaatatctcaatgaggcagctgga
gttgcagcagaagaagcaagaaacagtaagcaaaagaaacagaaggctcaggaaaactcc
atatgtttggctgctttagaaaaaactgaggacatcatcacaggtacttgtaaaatttca
gaagtattagaagatgaaccagaagatgatgacctgttcgagactgagtttaggcaatac
aagagaacttactatatgactaaaatgggtgtcgacatagtttcagatgactttctggct
gatcaggctgaatgttacgttcaggcaatacagtggattttgcattattactaccatggg
gttcagtcatggagctggtattatccttatcattatgcaccttacctatcagatattcgc
aacatcagtaaactcaaaatccagtttgagttaggaaaacctttcatgccgtttgaacaa
cttcttgcagtacttccagcagctagtaaagatctgctacctaaatgctaccagcacttg
atgaccagtgaagactctccaatcatagaatactatccaccagattttaaaacagactta
aatggaaaacagcaagaatgggaagctgtggtgctgattccatttattgaggaaaaacga
ttgctacaagccatggaatcttgcaacaaatgcctaatggaagaggagaggcaaagaaat
acacacagcgggtgcctaatgtactgtcttgacagagatacagagttcaaatacccgtca
ccatggccagaaaaattccctgctatcgaaagatgctgcaccaggtataaaaccatagcc
ttggatgcctggcatgttgaaataacccacaataaaattactaaaattaacaagagtgct
ttgtatttctgtgggtttcctactttaaagcatattaaacataagttctatctaaaaaaa
aatggagtacaagttttccagcagagcagccatggagagaacatgatgttagacattgta
attgatgaggattcaaaagagcagactgtagaaaatgtgtccagtttggtgcttggaaag
tcggtctttgttaactggccccaccttgaagaagccagagttgtagttgtgtcagatgga
gaaacaaagttttatttggaagaaccacatggaacacagaagctttacctgggaaatgct
atgccaccaactaaagtggcatatgtcggagacaaagaacagaacatctggttaaaagaa
gttcaagggattacagaacactaccagagaagaaaaggaataattgtaaataaaacctca
gtagttgtgtatgctcaactactcactggtcgtagatatcagctaaatcaaagtggtgat
gtttatttggaaaagcagtggtcaaaacaagttcttccttttgtttaccaaactgttgtt
aaggatatcaaagcatttgactcccacttttccaacattaaaaccttggatgacctgttt
cctcctggaagtacagtctttatgctaggatcaccttattatggctgcacaggagaagtt
caggattcatgtgatgtgatcacagaaggtagaattcgtgttgttttcagcattccatgt
gaaccacagcttgatgctttaatacagaatcagcataaatattctgtgaagtacaatcct
ggatatgtattagccagtcgtcttggaataagtggatatcttgtctccaggtttacagga
agtatatttattggaagaggatccaggaaaaatccccatggagaccacaaggcaaacgtg
gggttgaacctgaagttcaataagaagaatgaagaggtgcctggctatactaagaaggtt
ggaaatgaatggatgtattcttcttcagtagagcaacttcttgcagagtatttagaaagg
gtccctgaactcttcagttatatagccaaaaatagtcaagaagatatattttttgaagat
gacatttggcctggtgaggatgagaatggggctgagagagttcaagaaattgttgcctgg
ctgaaagcacatcctgtcagtgctttgtctcgctcatcttgtgacttacaaattttggat
gcagctatagttgagaaaattgaagaagaaatagagaaatgcaagattccagagcaaaga
aagagtaacaagaaggtgcgagtgacagtgaaaccccatttgttatataggcctttagaa
caacagaatggggttgttccagatcgagatgcagagtatcgattgtttgatcgtgttgtc
aatgtgagggaaaacttctctgttccagttggtctccgaggtaccattataggaattaaa
ggagccaatagagaaacagatgtgctctttgaagtattgtttgatgaagaattccttgga
ggcttaacaataaggtgctcacctgccagaggttatcgtctaccatcaagtgccttaatt
aatctgtctcatggtaatcggtcagaaacaggcaaccagaaattgacagccatagtgaaa
ccgcaaccagctgtgaatcagtataactcttactcgtctgatccatcatctgtatgctca
caaaaggtgcatctaggaggcctcaaccattctcctcgttctctttttgttcctacccga
gctcgtagtaaacaagatgatgaattttgcagcatctggcaatcattgcaaggctctggg
aaatctcaacctgttcaacaaaacatacacgcaaagggcacaattctacctcaagaagca
aagccaggagctggtaaccaattttataaaccaggcttcagtgagaacagtcttaaaggc
cagcaaaaaaaacaggagccatttaaaaagttcaaagaagattctaaaggtttaagaaat
gaaggttcttcacaaaaaataccaactaaacagagtttttcaggaggaaataaatataat
gttaagcttttgaagagaaatgaaagtccaaatgtgcctgttcttcaaaaggctactgtt
gatggaccctgtatagctgggaagaaggacattgaacttgaaagtcttctagcatctttg
aaaatctccaaagaaagtgaagagcagttgtcttattccaaggaagaaagagccacaaat
gaagaacatttatctccacagtcttttgttatgaaaggaacacagatgcttaaagaaatc
ttgaaaattgatggctctgatgcagaaaacaagaatgaagttaagctgctgattaatgaa
gttcctgcttcctcttatagacaagattcccatggacctgcctcacagcataggcaagca
aaaaaaattgctgcttacatgaacaagccttataacatcggaggccctcagaatcctcaa
gtgttggatgctggaggtcaccctttccttggtccacagtctacccctgtatcagaactt
tctcgtatttgttctcttgttggaatgtctcaaccagatttctctttcctcaggacacca
cagaccatgatggtttgtcaggtaaaattatccaatggcttattaatacatggacctcag
tgtcaatctgaaagtgaagccaaggagaaagctgccctttttgctttacaacgcttgagt
tctgttggagtgaactttcctttgccgccagcaccaccaatgttttcaaattatcaacct
gttggagcttcactatcacctggatccgttcctccagtcttcacacaacccactgcaaat
ataatgccctcatcatctcacatgtttaatccaatgccatggggagctccagtgccaatt
catggcaaaccttactatcctggttcctatcaagggaatatgcctcttacgggaactgta
ccagttggtactcacaaccagtttatacctctgcaggtaactaaaaaaagggctgccagc
aagaaaaatttcgagttcaaggagttccaggtttctcctcaagctgcaccactaaagaat
gaacaaccaatgtcttctgatcacattcaacaagataattcaacaactttaaaagctgct
caagacaatgtagctatgtcaagtgttcctcatagcaaaccaaacgcttccagcaagcga
aaagcaagaaagctggcagtcaattttggtgtaccaaaatcctcagaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (41)   

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