KEGG T03243: SFBmNL

Candidatus Arthromitus sp. SFB-mouse-NL: SFBmNL_00765

Entry

SFBmNL_00765      CDS       T03243

Symbol

topA

Name

(GenBank) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

aso Candidatus Arthromitus sp. SFB-mouse-NL

Brite

KEGG Orthology (KO) [BR:aso00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aso03032]
    SFBmNL_00765 (topA)
   03400 DNA repair and recombination proteins [BR:aso03400]
    SFBmNL_00765 (topA)
Enzymes [BR:aso01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     SFBmNL_00765 (topA)
DNA replication proteins [BR:aso03032]
Prokaryotic type
  DNA Topoisomerases
   SFBmNL_00765 (topA)
DNA repair and recombination proteins [BR:aso03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SFBmNL_00765 (topA)

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim Zn-ribbon_8 Zn_ribbon_recom zf-GRF Toprim_4 Zn_Tnp_IS1595

Other DBs

NCBI-ProteinID:

AID44673

Position

765151..767205

AA seq 684 aa
MAKYLVIVESPAKAKTIKKYLGLNYEVVASMGHIRDLPKSRLGVSVEDNYEPNYINVRGK
ADLIKSLKKASKKSEKVFLATDPDREGEAISWHLAYILGIDVDDKCRVEFNEITKTTIKN
SIKNARSINLNLVNAQQARRVVDRLVGYGISPILWKTVKPKLSAGRVQSAALKLICDREN
EINSFEVKQYFTIEGSGKKNSKKYVFKLHSKHKEKLDELTENKVLEILDELSEGKYIVDE
IKEGSKNKYPSPPFTTSTLQQEAYKKLNFQTKRTMSVAQSLYEGVEVKGYGVVGLITYMR
TDSVRLSADSLNQVNEFVAKVYGDKYKLDIPRQYGKNNKNIQDAHEAIRPTNVEITPDIA
KQTLKDDQYKLYSLIWRRFLASQMRNAVYNTMAISIKNGDYLFKLNGSQLQFDGFLKVYE
VDKDDKDLILPAFEEGEELKNVKVESIEHFTQPPPRYTEASFVKLLEEKSIGRPSTYVPT
ISTLFDRMYLKRQNKQFVPTELGIIVNDLIKNNFTEIVDIEFTADMEKKLDGIEEGKASW
KSIVHEFYKPLKEKIDIAENTVKKVVIEDEVTDVLCDKCGRNMVKKHSRYGVFLACPGYP
ECKNTKSIIQKLNIPCPKCGGEINVRKSKKGKVFYGCSKYPECDFISWNEPSNVKCPKCG
GITVKKIKRKQEFYECIDQDCKDK

NT seq 2055 nt +upstreamnt +downstreamnt
atggcaaaatatttagttatcgttgaatcgccagcaaaagctaagactataaaaaaatat
ttgggattgaattatgaagttgtagcatcaatgggacatattagagatttgcctaagagt
cgattaggagtatctgttgaagataattatgaaccaaattacataaatgttaggggaaaa
gctgatttaattaaatcacttaaaaaggcttctaaaaagagtgaaaaagtttttttagca
actgacccagatagggaaggtgaggctatatcttggcatttagcttatatattagggatt
gatgttgatgataaatgtagagttgaatttaatgaaataacaaaaacaaccataaaaaac
tctattaaaaatgctagaagtattaatttgaatttagttaatgctcagcaggctagaaga
gtagtagatagattagttggatatggtataagtcctattttatggaaaacagtgaagcct
aagttgagtgctggtagggtgcagtccgcagctctgaagttaatatgtgatagagaaaat
gaaataaatagttttgaagttaaacaatattttacgatagaaggcagtggaaaaaagaat
tctaagaaatatgtgttcaaacttcattctaagcacaaggaaaaattggatgaattaaca
gaaaataaagttttagaaatattagatgagttgtccgaaggaaagtatattgtagatgaa
ataaaggaaggctcaaaaaataagtatccatcaccaccttttactacaagtacccttcag
caagaggcttataagaaattaaattttcagacaaagaggactatgtctgttgctcagtca
ctatatgagggagttgaggttaaaggatatggagttgtaggattaatcacttatatgaga
acggattctgttagattatcggctgattctttaaatcaagtaaatgaatttgtggctaaa
gtatatggagacaaatataaacttgatataccgaggcaatatgggaagaataataaaaat
attcaagatgcacatgaagctataagacctaccaatgtagaaattacaccagatattgca
aagcaaactttaaaagatgatcagtataagttatattctctaatatggagaagatttttg
gcaagtcagatgcgtaatgctgtatacaatacaatggctattagtataaaaaatggagat
tatttatttaaattaaatggatctcagttgcaatttgatggatttttgaaagtttatgaa
gttgataaggatgataaagacttaatacttccagcatttgaagaaggggaagaattaaag
aatgttaaagtggaaagtatagaacatttcacacaaccacctccaagatataccgaagca
tcttttgttaaattattggaagaaaaatctataggaagaccaagtacttacgttccaact
ataagtactcttttcgatcgtatgtatttaaaacgtcaaaataaacaatttgttccaaca
gaattaggaattatagtcaatgatttaataaaaaataattttacagagattgttgatata
gaatttacagctgacatggaaaaaaaattagatgggatagaagaaggtaaagcaagttgg
aaaagtatagttcatgagttctataaaccactaaaagaaaaaattgatatagccgagaat
acagttaagaaggttgtgattgaagacgaagttactgatgttttatgtgataaatgtggg
cgtaatatggttaaaaaacatagtagatatggtgtttttctagcatgtccaggatatccg
gaatgtaaaaatactaagtctattattcaaaaattgaacattccatgtcctaaatgtggt
ggggaaatcaatgttaggaagagtaaaaaaggaaaagtattctatggatgcagtaagtat
cctgaatgtgattttatatcatggaatgaaccgagcaatgttaagtgtcctaaatgtggt
ggtattacagttaagaaaattaaaagaaaacaggagttctatgaatgtattgatcaagat
tgtaaagataaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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