KEGG   Actinobacillus succinogenes: Asuc_0040
Entry
Asuc_0040         CDS       T00558                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
asu  Actinobacillus succinogenes
Pathway
asu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:asu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Asuc_0040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:asu03021]
    Asuc_0040
   03400 DNA repair and recombination proteins [BR:asu03400]
    Asuc_0040
Enzymes [BR:asu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Asuc_0040
Transcription machinery [BR:asu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Asuc_0040
DNA repair and recombination proteins [BR:asu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Asuc_0040
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ABR73421
UniProt: A6VKC4
Position
complement(48471..52730)
AA seq 1419 aa
MKDLVNFLKAQSKTAEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLEKGQLLTEEQYLDAEERWADEFEAK
MGAEAIQSILRDMDLEHECEVLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREDVIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGDPIIVPSQDVVLGIYYMTRDKVNGKGEGMLLQDPREAEKAYRT
GRAELHSRVKIRITEYVKNAEGEFEPQTNLVDTTVGRAILWMIAPKGMPFNLFNQTLGKK
AISKLINECYRRLGMKESVMFADQIMYTGFAYAARSGSSVGIDDMVIPEKKYEIIAAAEQ
EVAEIQEQFQSGLVTVGERYNKVIDIWAAANERVAKVMMENLSTEEVINREGNPEKQSSF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGIVMSPLIEGGDEKVPLRELV
LGRVAAEDVLKPGTEEVLIPRNTLIDEQWCNIIDENSVDSIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNNGTIR
LANVKFVTNNEGKLVLTSRNTELTVIDAFGRTKEHYKLPYGTTLNKADGAEVTAGEIVAN
WDPHTMPVISEVAGFVKFVDIVDGLTVSRQTDELTGLSSILVQDVGERATAGKDLRPAIK
LVDAQGNDILIEGTDVAAQYFLPGKAIVTLDDGAEINVGDPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPTDGGETYEEMIPKWRQLNVF
EGEMVQRGDLISDGAETPHDILRLRGVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQ
MLRKAIITNAYDSEFLEGEQVEVARIKIVNRKREAEGKPLVEFERELLGITKASLATESF
ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRAKNRHNALAA
EQAVKFSAADEAEIDAEFNMIADDPTSSLAEMLNMADEE
NT seq 4260 nt   +upstreamnt  +downstreamnt
gtgaaagatttagttaattttttaaaagcgcaatcaaaaactgccgaagattttgatgta
attaagattggtttggcttcaccggacatgattcgatcatggtcgttcggtgaagtgaaa
aaaccggaaaccattaactaccgtacctttaaacctgaacgagacggtcttttctgtgcg
cgtattttcgggccggtaaaagattacgaatgtttatgcggtaaatataaacgtttgaag
catcgtggcgtaatctgtgaaaaatgcggggttgaagtgacccaaaccaaagttcgtcgc
gaacgtatggggcatattgaattagcgtcaccggtggctcacatctggttcttaaaatcg
ctgccgtctcgtatcggtttattgttagacatgccgttgcgcgatattgaacgagtgctt
tatttcgaatcttatatcgtcattgaaccgggtatgactgatttggaaaaagggcagtta
ttaactgaagaacaatatttggatgccgaagaacgttgggcggatgaattcgaggcgaaa
atgggggcggaagctatccagtccattttacgcgatatggatttagaacacgaatgtgaa
gttttacgtgaagaattacaagaaaccaattctgaaaccaaacgtaaaaaaatcactaaa
cgtttgaaattattagaagcatttattcagtccggcaacaaaccggaatggatggtaatg
actgtattaccggtacttccgccggacttacgtccgttagttccgttggacggaggtcgt
ttcgccacttcggatttaaacgatttataccgccgtgtcatcaaccgtaacaaccgtttg
aaacgactattagatttagttgcgccggatattatcgtacgtaatgaaaaacgtatgctg
caagaatccgtggatgcgctgttggataacggtcgtcgcggtcgcgcgattacggggtcg
aatcgtcgtccgctgaaatctcttgcggatatgatcaaaggtaaacagggtcgtttccgc
caaaacttattgggtaaacgtgttgactattcaggccgttctgtaatcaccgtaggtccg
tacttgcatttacatcaatgcggtttgccgaaaaaaatggcactggaattattccgtccg
tttatttatgcgaaactagaaagccgcggttatgcgacaaccattaaagcggcgaagaaa
atggttgagcgtgaagatgttatcgtgtgggatatcttggctgaagttattcgcgaacat
ccgattttattaaaccgtgcgccgaccttgcaccgtttgggtattcaagcatttgagcca
attttaatcgaggggaaagcaatccagttgcatccgcttgtttgtgcggcgtttaatgcg
gacttcgacggtgaccagatggcggttcatgtaccgttgacgttagaagcgcagttagaa
gcccgcgctttgatgatgtcgaccaataatattttatcaccggcgaacggtgatccgatt
attgtgccgtcacaagatgtggtattgggtatttactatatgacccgtgataaagtgaac
ggtaagggtgagggtatgctgttacaggatcctcgcgaagcggaaaaagcttatcgtacc
ggtcgtgcggaattgcattcacgtgtaaaaatccgtattacggaatatgtgaaaaatgcg
gaaggagagtttgaaccgcaaactaacttagtggataccactgtcggtcgtgctatttta
tggatgatcgcgccgaaaggtatgccgtttaatttgttcaaccaaactcttggtaaaaaa
gccatctctaaattgatcaacgaatgttatcgtcgtttaggcatgaaagagagcgtaatg
tttgcggaccaaatcatgtataccggtttcgcgtatgcggcacgttcgggctcatccgtc
ggtatcgacgatatggtgattccggagaaaaaatacgaaattattgcggcagcggaacaa
gaagtagctgaaattcaagagcaattccaatcaggtttggtgactgtcggtgaacgttat
aacaaagtgatcgatatttgggcggcagctaacgaacgtgtagcgaaagtaatgatggaa
aatctttctacggaagaagtaatcaaccgtgaaggtaatccggaaaaacaatcttcattc
aacagtatctttatgatggcggattccggcgctcgtggttccgccgcacagattcgtcag
ctagcgggtatgcgcggtttgatggctcgaccggacggttcaattatcgaaacaccgatt
acggcgaacttccgtgaaggtttaaacgtattacagtactttatttcaactcacggtgcg
cgtaaaggtttggcggataccgcattaaaaacagcgaactccggttatttaacccgtcgt
ttggttgacgtcgcacaagacttagttattgtcgaagacgattgtggtacgcatgaaggc
atcgtgatgtctccattaatcgaaggcggcgatgaaaaagttccgctacgtgagctggta
ttaggtcgtgtagccgcggaagacgtgttaaaaccgggtacggaagaagtcctgattccg
cgtaatacgttgatcgacgaacaatggtgtaatattatcgatgaaaattcggtagacagc
attaaagtacgttccgtcgtaacctgtgataccgatttcggtgtgtgcgctaaatgttat
gggcgtgacttggcgcgcggtcatctgattaaccaaggcgaggccgtcggtgttatcgcg
gcacaatctatcggcgaaccgggtacacagttaaccatgcgtacgttccacatcggcggt
gcggcatcagcagcggcgaaagaatccagcgtacaggttaaaaacaacggtacaattcgt
ttggctaatgtaaaatttgtcaccaataacgaaggtaaactagtattaacttcgcgtaat
accgaattaaccgtaatcgatgctttcggtcgtaccaaagagcattacaaactgccttac
ggtaccaccttaaataaagcggacggcgctgaagtcacggctggcgaaatcgtagcaaac
tgggatccgcatactatgccggttatatcagaagtggccggtttcgtgaaatttgtcgat
attgtcgacggtttaaccgtaagtcgccaaactgatgaattaaccgggttatcttctatc
ttggtgcaggatgtaggggaacgagcaacggcaggtaaagacttacgtccggcaattaaa
ttggtggatgcgcaaggtaacgacattttaatcgaaggtaccgatgtcgcagcacaatac
ttcttaccgggcaaagctatcgttactttggacgacggtgcggaaatcaacgttggtgat
ccgctggctcgtatcccgcaggaatctgtggggactaaagatattaccggcggtttgccg
cgcgttgcggacttattcgaagcacgcaaaccgaaagagccggcaatcttggctgaaatt
tccggtatcgtatccttcggtaaagaaaccaaaggtaaacgtcgcttattaattacacca
accgatggcggtgaaacttacgaagaaatgattcctaaatggcgtcagcttaacgtgttt
gaaggcgaaatggtacaacgtggcgatttgatttctgatggtgcggaaacaccgcatgat
atcttacgcttacgtggtgtgcatgcagttactgagtatatcgtaaacgaagtgcaagaa
gtttaccgcttacaaggggttaaaattaacgataagcacatcgaagtgatcgttcgtcaa
atgttgcgtaaagccattatcacaaacgcttacgattccgaattcttagaaggcgagcaa
gtggaagtggcgcgtattaagatcgttaaccgtaaacgtgaagctgaaggcaaaccgctg
gtagaattcgaacgcgagttgcttggtattaccaaagcatcattggcaaccgagtcattt
atctcggcggcctcgttccaggaaactacccgcgtattaactgaagcggcggttgccggt
aaacgtgacgaattacgcggcttgaaagaaaacgtgattgtcggccgcttaattccggca
ggtaccggttttgcatatcatcaaaatcgtgcgaaaaaccgtcataatgcgttagcggcc
gaacaagccgtgaaattctccgcagcggatgaagcggaaattgacgcggaatttaatatg
atcgcggatgatccgacttccagtctggcagaaatgctgaatatggcggatgaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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