KEGG   Acetobacter senegalensis: ASN_235
Entry
ASN_235           CDS       T04217                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
asz  Acetobacter senegalensis
Pathway
asz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:asz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ASN_235 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:asz03021]
    ASN_235 (rpoC)
   03400 DNA repair and recombination proteins [BR:asz03400]
    ASN_235 (rpoC)
Enzymes [BR:asz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ASN_235 (rpoC)
Transcription machinery [BR:asz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ASN_235 (rpoC)
DNA repair and recombination proteins [BR:asz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ASN_235 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Peptidase_M23 Apocytochr_F_C ApbA_C
Other DBs
NCBI-ProteinID: CEF39679
UniProt: A0A0U5EQU0
Position
I:complement(169005..173183)
AA seq 1392 aa
MNELMKILGQTGQAMTFDQIKIQLASPDQMRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIQLASPVAHIWFLKSL
PSRIGLMVDMTLKDLEKVLYFENYLVLEPGTSPLKQYSLLTEDQYLDVMDEYSEEGIEVG
IGAEAIKKVLERIDCDADKVHLRQELKETTSEAKRKKLVKRLKLIEAFAESGSRPEWMIL
DLVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLEVPEFAATPDRSEYDNTTGELVKA
GAPSFSSIGEVEYALSAGVLKLHDKIRARLESVNKDGQKVYETIVTTPGRVLIAQILPKS
DAIPFSLINRQLTKKAVSDVIDTVYRHCGQKEAVIFCDRLMALGFRHAAKAGISFGKDDM
IIPAEKKVLVDRTAAEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMTKEISRQ
EIGKPINSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYF
TSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIIIEEDCGTERGLTVRAVLDGGEIVA
SLSERILGRTAAADVVDPASGDVIVPRNHLIEEADAERIEKAGIESIFIRSVLTCDSRVG
VCGHCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSMIEAS
RDGKVVIRNRNVVQNSQNVPIVMARNCEILLTDDAGVEKARYRVPYGARLLTTEGASVSR
GQKLAEWDPYTLPIITEQAGKIEYLDLIDSITLVERMDEVTGLTSKVVVDYKQAGKGVDL
RPRLQIKGPNGEVIKLENGSDARYFLSPETLLSVENGAEVHAGDVLARLPREGSKTRDIT
GGLPRVAELFEARRPKDHAIIAEMEGRVEFGKDYKSKRRIIVKNDETGEETEYLIPKGKH
VSVQEGDFVEKGDPLVDGPRVPHDILKVMGVEALSDYLVNEIQDVYRLQGVKINDKHIEV
IVRQMLQKVEILEPGDTTYLIGETVDRIELDIENTKCLNAGERPAVAMPVLQGITKASLQ
TQSFISAASFQETTRVLTEAATAGKVDRLNGLKENVIVGRLIPAGTGSVMNRLRAIAASQ
DKQRVGRSSAAE
NT seq 4179 nt   +upstreamnt  +downstreamnt
atgaatgaactcatgaaaattcttggccagaccggccaggcgatgaccttcgatcagatc
aagatccagttggcatcacccgatcagatgcggtcttggtcatttggtgaaatcaagaag
cccgagaccatcaattaccggacattcaagccggaacgcgatggtctgttctgtgcgcgc
atttttggcccgatcaaggactacgaatgcctgtgcggcaagtacaagcggatgaagttc
cgcggcattatttgcgaaaaatgcggcgttgaagtcacgttggccaaggtgcgtcgtgaa
cgcatgggccacatccagcttgccagcccggttgcgcacatctggttcctgaaatctctg
cccagccgtatcggccttatggtcgatatgactctgaaagatctggaaaaggttctctat
tttgagaactatctggttctggagcccggcacgtctccgctgaaacaatattctctgctg
accgaggaccagtaccttgatgtcatggacgaatatagcgaagaaggcattgaagtcggg
atcggtgccgaggccatcaagaaggttcttgagcgcatcgattgcgatgccgacaaggtt
catctgcgtcaggaactcaaagaaaccacttcagaagccaagcgcaagaagctggtcaag
cgcctgaagctgattgaggcttttgctgaaagcggttctcgtccggaatggatgattctg
gatctggttccggttattccgccggaactgcgcccgctggtgccgctggatggtggccgg
ttcgcaacgtctgatctgaacgatctgtatcgtcgcgttattaaccgtaacaaccgtctc
aagcgcctgatggaactgcgtgcgcctgatatcatcgtgcgtaacgaaaagcgcatgctt
caggaagccgttgacgccctgttcgataacggtcgccgtgggcgtgccattaccggcgca
aataagcgtccgctgaagtccctgtccgatatgctgaaaggcaagcagggtcgcttccgt
cagaacctgcttggtaagcgcgttgactattccggtcgttccgtgatcgtggtcgggccg
gaactcaagctgcatcagtgcggcctgccgaagaagatggcgctggaactgttcaagccg
ttcatctactcgaagctggagaagtacggtcacgcaacaaccattaaagctgcaaagcgg
atggttgaaaaagaacgtccggaagtctgggatattcttgaagaagtgatccgcgagcat
cctgtgatgctgaaccgcgcgcccacgcttcaccgtcttggtattcaggcgtttgaaccc
gtgctggttgaaggtaaggccatccagcttcatccgctggtttgcaccgcgttcaacgct
gacttcgatggtgaccagatggcggtgcacgtgccgttgagccttgaagctcagcttgaa
gcgcgtgtgctgatgatgtccaccaacaacattctcagcccggctaacggtaagcccatt
atcgtgccgtctcaggatattgttctgggtctttactatctcagcctcgaagtgccggaa
tttgctgcaacgcctgatcgcagtgaatatgacaacacgacgggtgaactggttaaggca
ggcgctccttctttctcctccattggggaagtggaatatgcgctgagcgccggtgttctg
aagctgcatgacaaaatccgcgcacgccttgaaagcgtgaacaaggacggtcagaaagtt
tacgaaaccatcgtgaccacgccaggccgcgttctgattgctcagatcctgccgaagagc
gatgccattccgttctcgctgatcaacagacagctgaccaaaaaggccgtgtctgatgtg
atcgatacggtttaccgtcactgcggtcagaaagaagcggttatcttctgtgaccgtctg
atggctcttggtttccgtcacgctgcaaaggcaggcatttccttcggtaaggatgacatg
atcatcccggctgaaaagaaagtgcttgttgatcgtacggctgctgaagtgaaggaattc
gaacagcagtatcaggatggtctgatcacggctggcgaacgctacaacaaggtggtcgat
gcctggtcacgctgcacggacgaagtgcaggcggccatgacgaaagagatttcccgtcag
gaaattggcaagcccatcaactccgtgtggatgatgagccactccggggcgcgtgggtca
ccggcccagatgaagcagctcgccgggatgcgtggtctgatggccaagccgtctggtgaa
attatcgaacagccgattattgccaactttaaagaaggtctgtcggttctcgattacttt
acgtctacccatggtgcacgtaaggggctggccgataccgctctgaaaacggcgaactcc
ggttacctcacccgtcgtctggtggacgttgcgcaggatagcatcatcattgaagaagac
tgcggtacggaacgtggtctgacggttcgcgccgttctcgatggtggtgaaattgttgcc
tccctgtcagaacgtatcctcggtcgtaccgcggctgcggatgtggtcgatccggcttct
ggggacgtgattgttccacgcaatcatctcattgaagaagcggatgcagagcgcattgaa
aaagcgggcattgagtccattttcatccgctccgtgctgacctgcgatagccgggtaggc
gtttgcggccattgctatggacgagaccttgcccgcggcacaccggtcaatattggtgaa
gccgttggtgttatcgctgcacagtccatcggcgagcccggcactcagctgaccatgcgt
accttccatatcggtggtgcggctcagcgtggtgccgagcagtccatgatcgaagcatct
cgtgacggtaaggttgttatccgcaaccgtaacgtggtgcagaactctcagaacgtgccg
attgtcatggcacgtaactgtgaaattctgctgactgacgatgctggtgtggaaaaagcc
cgttatcgtgtgccttacggtgcccggttgctgacaacggaaggcgcatctgtgtcccgt
ggtcagaaactggcagagtgggatccctacaccctgccgatcatcacagagcaggctggt
aagattgaatatcttgacctgattgactccatcacgctcgtcgagcgtatggacgaagtc
accggcctgacctccaaagtggtggttgactacaagcaggcagggaagggtgttgatctg
cggccgcgtctgcagatcaaaggcccgaacggcgaggtcatcaaactggaaaacggcagc
gatgcccgttacttcctgtcacctgaaacactgctgtccgttgaaaacggtgcagaagtt
catgccggtgacgttctggcccgtctgccgcgtgaaggctccaagacccgtgatattaca
ggtggtctgccgcgtgtggcagaactgtttgaagcacgtcgtccgaaagaccatgccatc
attgctgagatggaagggcgtgttgaattcgggaaggattacaagtccaagcgccgtatt
atcgtgaagaacgatgagacaggtgaagagaccgaatatctgatcccgaaaggcaagcac
gtttccgttcaggaaggtgactttgttgaaaagggcgatccgctggtcgatggtccccgc
gtgccgcatgatattctgaaggtcatgggggttgaggctctgtccgattacctcgtgaat
gaaattcaggatgtctatcgtcttcagggcgtgaagattaacgataagcatatcgaggtt
atcgttcgtcagatgctgcagaaggttgaaattctggagccaggcgacacgacatacctg
attggcgaaaccgttgatcggattgagctggatatcgaaaatacgaagtgcctgaacgca
ggtgaacgtcctgccgtggccatgccggtgctgcaggggatcaccaaggcgtccctgcag
acacaatccttcatctctgcagcctccttccaggaaaccacgcgtgtcctgacggaagct
gcaacggccgggaaagtcgacagactgaacggcttgaaggaaaacgtgattgttgggcgc
ctgatccctgctgggacaggaagcgtcatgaaccgcctgcgggctattgctgcctctcag
gacaagcagcgggtcggacggtcttcagcagccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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