KEGG   Arabidopsis thaliana (thale cress): AT1G06670
Entry
AT1G06670         CDS       T00041                                 
Symbol
NIH
Name
(RefSeq) nuclear DEIH-boxhelicase
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT1G06670 (NIH)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G06670 (NIH)
   03012 Translation factors [BR:ath03012]
    AT1G06670 (NIH)
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     AT1G06670 (NIH)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     AT1G06670 (NIH)
Translation factors [BR:ath03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    AT1G06670 (NIH)
SSDB
Motif
Pfam: Helicase_C DEAD OB_NTP_bind HA2_C R3H Ank_2 HA2_N AAA_19 Ank_5 nSTAND3 AAA_22 ATPase PhoH AAA_7 Sigma54_activat
Other DBs
NCBI-GeneID: 837177
NCBI-ProteinID: NP_172152
TAIR: AT1G06670
UniProt: F4IDQ6
Position
1:2040410..2047655
AA seq 1576 aa
MAKKKKDTKHTRLCEATGAWATKVLEDFRASGNDSYVFEQQLTNSERGIIHQMCRTMGLR
SKSNGSGEERRLSLFKGDGISKSDKRRMYEARNQKEKEGDGISKSYSKHRYETRFQKAGG
IRKTRISPKKLKCVSFPPEAKAVLHDLFTRYPPCDGDTTGTSLGIYTTGNVNSNWKDDFF
KKPHMTKHDIENNVVSLSSRLKKERHFREIFEARSKLPIASFRDAIISAVESNQVVLIAG
ETGCGKTTQVPQYLLDHMWHSKKEACKIICTQPRRISAISVSDRISWERGETIGRTVGYK
VRLQSEGGRESSVVFCTNGILLRVLIGKGVNSSVPDITHIIVDEIHERDSYSDFMLMILR
DLLPSNPHLRLILMSATLDAERFSEYFGGCPVVRVPGFTYPVRTFFLDDALSVLNSDKNS
HLLSAVKRDFKDEDKVSLDEAIDLAWTNDEFDCLVDLVSSEGSHEAYNYQNSTTGLTPLM
VFAGKGRVSDVCKLLSVGADCTLKSKEGITALELAEKENQFETAQIIREHAGNIQSNSQQ
AQDLLDKYMATIKPEEVDVGLIVKLMKKICSDSKDGAILVFLPGWEEISKTKEKLLDDRF
FAHSAKFIILCLHSRVPAEEQKKVFNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRM
KEKSYDPYNDVSTLQSSWVSKANAKQRAGRAGRCQAGICYHLYSKLRAASLPEYRVPEVM
RMPVDELCLQVKMLDPNCNVNDFLQKLMDPPVAQSIENALIILKDIGALTPEEELTELGQ
KFGQLPVHPRISKMIYFAILVNCLDPALILACAADEKDPFTMPLSPGDRKKAAAAKHELA
SLYGDHSDHLATVAAFQCWKNAKASGQAKEFCSKYFISQVVMKRLDDLCRKLQGELNRHG
VIPSSSSNCSLNAHDPGILRAVIAVGLYPMLGRMCPLSKNRTRSVIETIAGAKVRVPSLS
NNVDMSSTKFDEALIVFDEITRGDWGVVIRSCTVLPTIPVLLFSREIAVSTTESYDAVKS
DDEEDHKVGNVGDAMDIDKEVGRPGEKIMLGPENSVKVVVDRWLPFKVTAFEIAQMYILR
ERLMASILFKVKHPKENLPPHLGASMYAIASVLSYDSLAQSSVQTVAVQPITSVVDATSP
RDDIPSTNPNELREHDPNTTPMGSKLELANKLGLGNMEESLPSNFADGNEQPDPNTSPVE
DVSAATKQKKMQSESKRCKSLNNVDLGNIEENFGNMEENPPSDLAIGNEQTLPKLASNLD
MGNMEENTPSDLANGNEKTEPNSANSMDLGNMEENTPSDLANGNKKKEPKSVSKLDLGSE
KVSIPSNLVNGNEQHDLNIAPGEDASAAKQPEKKRSRSKKRKSGNNLDLGKMEKSKPSDL
ANENEQTEPKSANNLDLGNMKENTPSDLANENEQTELRLPNNSDYGNMEESLPLNLANGD
EQPDPTTAPMEAAKQPKKKRSRSKKCKSVNNLDLGNMEENKPSDLANGNEQKDPESVNRL
DPGKEKESIPSNLVSGNEQPDSNTAPAKKPKKKKRKLANNFDSVNNMEEKMPSTNVLSQG
NKSGLIEEKPSIPSDQ
NT seq 4731 nt   +upstreamnt  +downstreamnt
atggcgaagaagaagaaggatacgaagcatactcgtctctgcgaagccactggggcttgg
gccaccaaggtccttgaggattttcgcgcctccgggaacgattcttacgtctttgagcag
caacttacaaatagcgaacgtggcattattcatcagatgtgccgaactatgggtctccga
tcaaaaagtaacgggagtggggaagaaaggcgtctttctcttttcaaaggagatggcatt
tcaaagtcagacaagaggcgtatgtatgaagccagaaatcagaaagaaaaagaaggagat
gggatttcaaagtcatacagcaagcatcgctatgaaaccagatttcagaaagcaggcggt
ataagaaagacgagaatatctccaaagaagctcaaatgtgtgtcatttccaccagaggct
aaagctgttctgcacgacttatttactcgctatccaccttgtgacggcgatactacaggg
acatcactgggtatatatactacgggaaacgtcaacagtaattggaaagatgatttcttc
aagaaacctcatatgacaaaacacgatattgaaaataacgtggtatctctgagttctaga
ctgaaaaaagaaagacattttcgagagatctttgaagcacgatcaaagcttcccatcgca
tcttttcgcgatgccattatatctgcagtggaatccaatcaggttgttcttattgctggt
gaaactggttgtgggaaaactactcaggtgcctcaatatcttctagatcatatgtggcat
agtaagaaagaagcatgcaaaatcatttgcacccaaccacgtcgtatctcagctatttca
gtttctgatcgaatatcttgggaaagaggtgaaactattgggagaactgtcggctacaag
gttcggctgcaaagtgaaggtggaagagagtcatcagttgttttctgcacgaatggcatt
ctattgagggtgcttataggcaaaggcgttaacagctctgttcctgatataactcacatt
attgtggacgaaatccatgaaagggactcctactctgatttcatgttaatgattttaagg
gacttgcttccgtctaatcctcatctccgactgattctgatgagtgctactcttgatgct
gagaggttttctgaatattttggaggttgtccagttgtccgagtacctggattcacttat
ccagtgagaaccttttttctggatgatgcgctctctgtcctgaattcagacaagaatagt
catctactttctgctgtcaaacgtgattttaaagatgaagataaagtttctttggatgaa
gcaatcgacttggcatggacaaatgatgagtttgattgtctcgtagatctagtttcatct
gaaggaagtcatgaggcttacaattaccagaactcaacgacaggcctaacaccacttatg
gtctttgctggaaagggcagggttagcgatgtctgtaagctcctttcagtcggcgctgac
tgtacactgaagtccaaagaaggtataacagcattagaattagctgaaaaggagaatcaa
tttgaaactgctcaaataatcagggaacatgcgggtaacatccagtccaattctcagcaa
gcacaagacttacttgataagtatatggcgacaatcaaaccagaagaagtagatgtgggt
cttatagtgaagttaatgaagaaaatatgcagcgattcaaaagatggtgccattcttgtt
tttctacctgggtgggaggaaataagcaaaacaaaagagaaattgcttgatgatcggttt
tttgcacatagtgctaaattcatcattctatgtcttcactcaagggttccagctgaggaa
cagaagaaagtttttaatcgcccccctcgtggttgtcgcaaaattgtacttgcaacaaat
attgctgaatcagcagttaccatcgatgatgtggtttatgtgatagatagtggtcggatg
aaggaaaagagttatgatccctataatgacgtgtcaacgctccaatcttcttgggtatca
aaagcaaatgcaaaacagagggcaggccgagcaggccgttgccaagctggcatctgttat
catctatattctaaactccgggcagcgtctttgcccgaatatagagttcctgaagttatg
agaatgccagtggatgaactctgcttgcaggttaagatgctggatccgaattgcaacgta
aatgatttccttcagaaattgatggacccgcctgttgctcaaagtattgaaaatgcatta
atcatccttaaagatattggagctttgactcctgaagaagagctgactgaacttggacag
aaatttggtcagcttccagttcatcctcggattagcaagatgatttatttcgccatatta
gtgaactgtttggatccagcacttattctggcatgtgcagctgacgagaaggatccgttt
accatgcccttgtcgccaggtgatagaaaaaaggctgctgccgcaaaacatgaacttgca
tcgctttatggagaccacagtgatcatcttgccactgtcgcggcttttcagtgctggaaa
aatgcaaaagcaagtggtcaagctaaggagttttgttctaagtacttcatctcccaagtt
gtcatgaagaggctggatgatctgtgtcgcaagcttcagggagaacttaatagacatggg
gtcatacctagcagcagctcaaactgtagcctgaatgctcatgatccgggtattctccgt
gctgttatagcagttggattgtaccctatgttgggaaggatgtgcccactttccaagaat
cggacaaggtctgtaatagagactattgctggagccaaagtccgtgtgccctcgctatca
aacaatgttgacatgtcctctaccaagtttgacgaagctttaattgtttttgatgagatc
actcgaggagattggggtgtggtgataaggagctgcactgttcttcccactatacctgtg
ttactgttttcaagagagatagccgtttctactacagagagctatgatgctgttaagagt
gatgacgaggaagaccacaaagtaggaaatgtaggagacgcgatggacatagataaagaa
gttggtaggcctggagagaaaataatgcttgggccggaaaattcagtaaaagtagtagtg
gatcggtggctgcctttcaaggttacagcttttgaaattgctcaaatgtacatcttgaga
gagagactaatggcgtccattttgttcaaggttaaacatccaaaggaaaatttgccgcct
catctcggtgcttctatgtatgcaatagcttctgttctctcatatgatagcctcgcacaa
tcttcagttcaaactgtagctgtgcaacctattacttcagtggtagatgcaacgagtccc
agagatgacataccttccactaaccccaatgagcttcgggagcatgacccgaacactact
ccaatggggtcaaagctcgaattagccaacaagttgggtttgggtaatatggaagagagc
ttgccttcaaatttcgctgatgggaatgagcaacctgacccaaacacttctccagtggaa
gatgtttcggcggctacaaaacaaaagaagatgcagtcagagtccaaaaggtgcaagtcg
ctcaacaacgtggatttggggaacattgaagagaatttcgggaacatggaagagaaccca
ccttctgatctggctattgggaatgagcaaacattgccgaagttagctagcaacttggac
atggggaacatggaagagaacacgccttctgatctggccaatgggaatgagaaaacagag
cctaactcagccaacagcatggatttagggaacatggaagagaacacgccttctgatttg
gcaaatgggaataagaaaaaagagcctaagtcagtcagcaagttggatctgggtagcgag
aaagtgagcattccttctaatctcgtcaatggaaatgagcaacatgacctaaacattgct
ccaggtgaagatgcttcagcggctaagcaaccagaaaagaagcgatccaggtctaaaaag
cgcaaatcaggcaacaacctggatttggggaagatggaaaagagcaagccttccgatctg
gcaaatgagaatgagcaaacagagcccaagtcagccaacaacttggatttagggaatatg
aaagagaacacgccttcggatctggctaatgagaatgagcaaacagagcttaggctacct
aacaactcggattatggtaacatggaagagagcttgcctttgaatcttgctaatggggat
gaacaacctgacccaaccactgctccaatggaagctgctaagcaaccaaaaaagaagcga
tcaaggtccaaaaagtgcaaatcagtcaacaacctggacttggggaacatggaagaaaac
aagccttctgatctggcaaacggaaatgagcaaaaagatcctgagtcagtcaacaggttg
gatccgggtaaggagaaagagagcattccttcgaatcttgtcagtgggaatgagcaacct
gactcaaacactgctccagctaagaaaccaaaaaagaaaaagcgcaaattagctaacaac
tttgattcggttaacaatatggaagagaaaatgccttccactaatgtattgagccaggga
aacaagtcaggtttgattgaggaaaaaccgagcataccttccgatcaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (15)   
   Pfam (15)   
All databases (63)   

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