KEGG   Arabidopsis thaliana (thale cress): AT1G14650
Entry
AT1G14650         CDS       T00041                                 
Name
(RefSeq) SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
  KO
K12825  splicing factor 3A subunit 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT1G14650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT1G14650
Spliceosome [BR:ath03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    AT1G14650
 Complex B
    AT1G14650
 Complex C
   U2 SnRNP specific factors
    AT1G14650
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 838027
NCBI-ProteinID: NP_001319005
TAIR: AT1G14650
UniProt: Q8RXF1 A0A178W732
Structure
Position
1:5027316..5031883
AA seq 785 aa
MFSSMQILPLEAPPTDGKLGPLPPSQLTDQEVEERELQAEQNNSNLAPPAAVATHTRTIG
IIHPPPDIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFLKSSDPYHAFYQHKLTEY
RAQNKDGAQGTDDSDGTTDPQLDTGAADESEAGDTQPDLQAQFRIPSKPLEAPEPEKYTV
RLPEGITGEELDIIKLTAQFVARNGKSFLTGLSNRENNNPQFHFMKPTHSMFTFFTSLVD
AYSEVLMPPKDLKEKLRKSAADLTTVLERCLHRLEWDRSQEQQKKKEEDEKELERVQMAM
IDWHDFVVVESIDFADEEDEELPPPMTLDEVIRRSKASAMEEDEIVEPGKEVEMEMDEEE
VKLVAEGMRAANLEENVKIENVHDEEAPMRIVKNWKRPEDRIPTERDPTKVVISPITGEL
IPINEMSEHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTE
EEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQALSQNANGEEQGDGVYGDPNSFP
GPAALPPPRPGVPIVRPLPPPPNLALNLPRPPPSAQYPGAPRPLGVPMMQPMHQQHQLTM
PGPPGHPQMMMNRPPQMQPGMHVPPPPGSQFAHHMQIPRPYGQLPPSAMGMMQPPPMPGM
APPPPPEEAPPPLPEEPEAKRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDGQFMEI
TVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER
GGRKR
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgttcagctcgatgcagatactgccactggaggctcctcctacggatgggaagttaggt
ccacttcctccgtcgcaattaacagatcaggaagtcgaagagagggagttgcaagcagag
caaaataattcaaatctagctcctccggcggctgttgctactcacacgaggactatcgga
atcattcatccacctccagatatcagaactattgttgagaaaacggctcagtttgtctcc
aaaaacggtttggagtttgaaaagaggattattgttagtaatgaaaagaatgctaagttc
aactttttgaagagctcagatccttatcatgccttttaccagcacaagctcactgaatac
cgtgctcagaataaagacggagctcagggtactgatgattcagatggtactacagatccc
caacttgatactggagctgctgatgagtctgaagctggtgatacacaacccgaccttcag
gctcaatttaggattccttctaagcctttggaagctccggaacctgagaagtatacagtt
agacttcctgaagggatcacgggtgaagagcttgatattattaagctcacagcacagttt
gtggcacggaatgggaaatcgtttctaacgggattgtcgaatagagagaacaacaatcct
cagtttcattttatgaagccaacacacagcatgttcactttttttacttctctggttgat
gcgtattcggaagtattaatgcctcccaaagatttgaaagaaaagctgagaaagagtgct
gctgatttgacgactgttcttgagcgttgtttgcatcgtttggaatgggatcgttcccag
gagcagcagaagaagaaagaagaggatgagaaagagcttgagcgagtgcagatggctatg
attgattggcatgattttgtggttgttgagtcgatagattttgcggacgaggaagatgaa
gagttgccaccgcctatgacacttgacgaggttataaggaggagcaaagcatcagccatg
gaagaagatgaaattgttgagcctggaaaggaggtcgaaatggaaatggacgaagaagaa
gttaagcttgttgcagaaggaatgagagcagcaaacctagaagagaatgttaagattgaa
aatgtacatgatgaagaagcacctatgagaattgttaagaactggaagaggccagaagac
aggatcccaacagagagagatccaactaaagttgttatatcaccaattactggagagctg
attcccattaacgagatgtctgagcacatgaggatttctcttattgatcctaagttcaaa
gaacagaaggatcggatgtttgctaagattcgtgagaccactcttgcacaagatgatgag
attgctaaaaacatagtcgggttggcccgcctgcgtcctgatatctttggaacaaccgaa
gaagaagtctcaaatgctgtaaaagcagagattgagaagaagaaagatgagcagcccaag
caagtgatatgggatggtcacacaggaagtattggtcgcacagcaaaccaagccttgagt
cagaacgctaatggagaggagcaaggtgatggcgtttacggagatcccaatagcttccct
ggtccagctgctcttccacctcctcgaccaggtgtcccaatagtccgaccattgccacca
cctcctaatctcgccttgaacctccctcgtcctcccccttctgctcagtaccccggtgca
ccaaggccactaggtgttccgatgatgcagcccatgcatcaacaacaccagctcacaatg
ccagggccaccaggacacccgcagatgatgatgaaccgaccaccacagatgcagcctggt
atgcatgtgccacctccaccgggatctcagtttgctcatcatatgcaaattcctagacct
tatggtcagcttccaccatctgcaatggggatgatgcaaccaccacctatgcctgggatg
gctcctcctccaccacccgaggaggctccaccacctcttcctgaggaaccagaggcaaag
agacaaaagttcgatgagtcagcccttgttccagaagaccagtttcttgctcagcatccg
ggtccggctacaatcagggtttctaagccaaacgagaatgatggacaatttatggagatc
acagtgcagtcgttatctgaaaacgtgggaagtttgaaggagaaaatagctggggagatt
caaatcccagcaaacaaacagaagttgagtggaaaagcagggttcttaaaggacaacatg
tcgcttgcacattacaatgtcggagcaggagaaatcctaacattgtctttgagggaacgt
ggtgggagaaagagatag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (4)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
3D Structure (1)   
   PDB (1)   
Protein domain (3)   
   Pfam (3)   
All databases (61)   

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