KEGG T00041: AT1G18340

Arabidopsis thaliana (thale cress): AT1G18340

Entry

AT1G18340         CDS       T00041

Name

(RefSeq) basal transcription factor complex subunit-like protein

K03143

transcription initiation factor TFIIH subunit 3

Organism

ath Arabidopsis thaliana (thale cress)

Pathway

ath03022

Basal transcription factors

ath03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:ath00001]
09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    AT1G18340
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT1G18340
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT1G18340
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT1G18340
Transcription machinery [BR:ath03021]
Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     AT1G18340
DNA repair and recombination proteins [BR:ath03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     AT1G18340

SSDB

Motif

Pfam:

Tfb4

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

TAIR:

UniProt:

Position

1:complement(6311443..6313931)

AA seq 301 aa
MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI
ATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRI
PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP
IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV
DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKAPS
T

NT seq 906 nt +upstreamnt +downstreamnt
atgcctgccattgcttctaagcagtattcagacgatgttagtcttctagttttgttgctt
gatacgaatcctcttttctggagcactacatcgattaccttctctcagttcctttctcat
gtgcttgcgtttcttaatgcggttttggggttaaatcagttgaaccaagttgtagttata
gctactggatacagttcttgtgattacatttatgattcgtctttgacatcaaatcatgga
aatttcgagagcaatggaactggaatgcctgcaatttttggttctttgcttaagaaattg
gaagagtttgttaccaaagatgaggagctcagcaaggaggaagtgtctgaggatagaata
ccttcttgtctcttgtcaggatcactctccatggctctttgctatatacagagggttttc
cgttctggacatcttcatccccagcctcggattttatgcttgcaaggttccccagatggc
ccggaacagtatgttgctgttatgaactctatcttctctgcccaacgcttgatggttccc
attgattcgtgttacataggtgtacagaactcagcatttttgcagcaggcatcttatata
actggtggtgtacatcatacacctaaacagttggatgggctatttcaatatctaacgaca
atctttgcaaccgatttgcactcccgcggttttgtacaacttcctaaacccataggtgta
gattttcgcgcatcgtgcttttgccacaagaagacaatagatatgggctacatatgctca
gtgtgtctgtccattttctgtgagcatcacaagaaatgttcaacctgcgggtctgtattt
ggtcagtctaaacttgatgatgcttcatctgcctctgataagaagagaaaagctcctagt
acctaa

All links

Gene (11)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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