KEGG   Arabidopsis thaliana (thale cress): AT1G27840
Entry
AT1G27840         CDS       T00041                                 
Symbol
ATCSA-1
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
  KO
K10570  DNA excision repair protein ERCC-8
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03420  Nucleotide excision repair
ath04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    AT1G27840 (ATCSA-1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT1G27840 (ATCSA-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ath04121]
    AT1G27840 (ATCSA-1)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT1G27840 (ATCSA-1)
Ubiquitin system [BR:ath04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     AT1G27840 (ATCSA-1)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      AT1G27840 (ATCSA-1)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40
Other DBs
NCBI-GeneID: 839677
NCBI-ProteinID: NP_174105
TAIR: AT1G27840
UniProt: Q93ZG3 A0A178W453
Position
1:complement(9693008..9696546)
AA seq 450 aa
MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL
SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFI
TGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG
AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP
PILKRTAVGSKLSSVAKSSLGGQNRLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRIHPG
MLSTLDRATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNK
GIQLDTSDDPALVFVPCMKTVKAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGSD
RQILVWSPGGTVEDEMVQDEVAEDKDNWSD
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgtgggaggctatcaaagacagagaaaccggtcgaattcgttccaattccttcgccaat
cgattcaaatcccgccggattttgtctctccaactctctaatcgaaaagactttgtttct
cctcatcgtggctccgttaactcccttcaggttgatttgacggaggggagatatcttctc
tctggagcagcagatggttcagctgctgtatttgatgttcaacgggccactgattacgag
gcaagtggtctaattgccaagcacaagtgtatatttactgtcgacaagcaacatgaaaat
ggacataaatatgccatatcctctgccatttggtatcccattgacactgggctcttcatt
acaggttcttttgatcattacttaaaagtctgggataccaatactgctcaggcggttgtg
gattttaaaatgcctggaaaggtttatagaactgccatgtcttctatggcaatgtctcac
acgttaattgctgctggaactgaagatgtccaggttcgcctctgtgatatagcttctggg
gcattctctcacacattatcgggtcaccgtgatggcgttatgtcagtggaatggtctact
tccagcgagtgggttttgtatactgggggttgtgatggtgcaatacgtttctgggacatt
agacgggctggttgtttccgtgttctagatcaatcacagacacaacttgggttccgacca
ccaattttaaagcgaactgcggttggcagtaagctttcttcagttgcaaaatcttctttg
gggggccaaaataggttgaagacactgcagagtaaacaaactggaagccaaagtgtaaag
ggatcatctagcgctaaagcttcagtggaaaagtctcgacagaagagaattcaccctgga
atgttatctactctagatcgtgctacggctcattatggtgctgttactggcttaaaggca
actaacgatgggatgtatcttcttagtgctgggtcggattcaagaataagattgtgggat
attgaatctggacgcaacaccctggtgaactttgaaactggacgcatccagactaacaaa
ggaatccaattagatacaagcgatgatccagctctggtatttgttccatgcatgaagact
gtgaaggcttttggcatgtggtcgggtagaacaacactgatgcttcgtggacactacgaa
agcgtgaacacttgctgctttaattccaatgatcaggaactatacacaagtggctcagat
agacaaatacttgtgtggtcaccaggcggaacagtggaagatgaaatggtgcaagatgaa
gtagccgaagataaagacaattggagcgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (5)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (36)   

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