KEGG   Arabidopsis thaliana (thale cress): AT1G42440
Entry
AT1G42440         CDS       T00041                                 
Name
(RefSeq) pre-rRNA-processing TSR1-like protein
  KO
K14799  pre-rRNA-processing protein TSR1
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ath03009]
    AT1G42440
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    AT1G42440
SSDB
Motif
Pfam: RIBIOP_C AARP2CN Tsr1_G-like ATP-synt_F6 KCTD1-15_CTD
Other DBs
NCBI-GeneID: 840848
NCBI-ProteinID: NP_564480
TAIR: AT1G42440
UniProt: Q9ASU6 F4I9G4
Position
1:complement(15895197..15900105)
AA seq 793 aa
MGRSRVQVNKAHKTRFSSKSSRNLHRTNLQDSGRIGKSDSNYVKGAKAARVQRGKMLREQ
KRAAVLKEKRASGGINSAPRVIVLFPLSASVELNSLGEDVLKLLSSDGSGIASSTVASSE
YKLRATVLKAPHGDLLTCMEMAKVADLMAFVASASAPWEENSSNFIDSFGSQCLSVFRSI
GLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFYPADTRDELHKFMWLFKAQR
LTVPHWRSQRSYIVARKAGMLVDDESSGKCTLLLSGYLRARKLSVNQLVHVSGVGDFQFS
KIEVLKDPFPLNERKNQNSMELDDSHDEEVLKSLVPDPMKQEPLVIENTPDPLAGEQTWP
TEEEMAEADKNQKQGRLKKKTLPRGTSEYQAAWIVDETDEEDSDNGDSDDNGMVLDRGED
SNQEGMYDQEFEDDGKSLNLRDIDTETQNESEMVDDEDLTEEQIKDEIKKIKEAYADDEE
FPDEVETPIDVPARRRFAKYRGLKSFRTSSWDPNESLPQDYARIFAFDNVARTQKLVLKQ
ALKMEEEDRDDCVPIGSYVRLHIKEVPLGAASKLSSLVNTTKPIIGFGLLQHESKMSVLH
FSVKKYDGYEAPIKTKEELMFHVGFRQFIARPVFATDNFSSDKHKMERFLHPGCFSLASI
YGPISFPPLPLVVLKISEGSDPPAIAALGSLKSVEPNKIILKKIILTGYPQRVSKMKASV
RYMFHNPEDVKWFKPVEVWSKCGRRGRVKEPVGTHGAMKCIFNGVVQQHDVVCMNLYKRA
YPKWPERLYPQLL
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgggacgctctcgagttcaagttaacaaagctcacaagactcgtttctcctctaaatct
tctcgtaatctccatagaaccaaccttcaagatagtggccggattgggaaatcggatagt
aactatgttaaaggagctaaagctgctcgtgttcaacgtggtaagatgcttagagagcag
aagagagcagcagttttgaaggagaagagagcatcaggaggaattaacagtgctcctcgt
gttatcgttttgtttcctctctctgcttctgtggaattgaattcacttggtgaagatgtt
ttgaagttgttatcttctgatggttctggaattgcttcttcgacagttgcatcttctgag
tataagctacgagcaactgtgttaaaggcgcctcatggggatcttctgacatgtatggaa
atggccaaggttgctgatttgatggcttttgttgcatctgcaagtgctccgtgggaagag
aatagctctaacttcatagattctttcggaagtcagtgtctttctgtgtttagatcaatt
ggtctaccaagcactactgtgttgatccgtgatttgcccagtgatgtgaaaaagaaaaat
gagatgaaaaagatgtgtgcctctcaacttgcttctgaatttcctgaggattgtaagttt
tatccagcagataccagagatgagttgcataagtttatgtggttattcaaggcgcaaagg
cttactgtgcctcactggcgaagtcaacgatcatacattgtggctcgcaaggctgggatg
ctggtggatgatgaaagctcaggaaagtgcactctacttctctctggttacttgcgtgct
cgcaaactgtctgtaaatcaactggtccatgtttctggcgttggggattttcaattctcc
aaaattgaagtgctgaaggatccatttcctttgaatgaaaggaaaaatcagaattccatg
gaattagatgattcacatgatgaagaggtattgaagtctctggttcctgatcccatgaaa
caagagcctttagtaattgaaaacactccagatcctttagcaggggaacagacatggcca
acagaggaagaaatggctgaggctgacaaaaatcagaagcagggcaggctaaagaagaag
actttgccgcgagggacttcagaatatcaggctgcttggattgtggatgaaacagatgaa
gaggattccgataatggtgattctgatgataatggtatggtattggatagaggagaggat
tccaatcaagaaggaatgtatgaccaagaatttgaggatgacggaaaatcattgaacctg
cgggatattgatactgaaactcagaatgaatccgaaatggtggacgatgaagacttgaca
gaagaacaaattaaggatgaaatcaagaaaatcaaagaggcatatgctgatgacgaagaa
tttccagatgaagtagagactcccattgatgttcctgcaagaagacgttttgcaaagtac
aggggtcttaaatccttcagaacctcctcgtgggatccaaatgagtctttacctcaggac
tatgctagaatttttgcttttgataatgtcgcaaggactcaaaagcttgtgctcaagcaa
gccctgaagatggaagaagaagacagagatgattgtgtaccaattgggtcatatgtacgg
ctgcatattaaagaagtgcctcttggtgctgcctctaaactatcttctcttgtgaacaca
acgaaaccaattataggatttgggcttctgcagcatgaatccaagatgtcggttctgcat
tttagcgtaaagaagtatgatggttacgaagctcctattaaaacaaaagaagagctaatg
ttccatgttggtttccgtcaattcattgcaaggccggtatttgcgaccgacaatttcagc
tcagacaagcacaagatggagagattcctgcatccagggtgtttctcgttggcttcaata
tacggccccatatctttcccaccccttcctttggtagttctgaagatttctgaagggtcg
gatcctcctgccattgctgcccttggttccttgaaaagcgtagaacccaacaaaataatc
ttaaagaagataatattaactgggtaccctcagagagtatcgaaaatgaaagcttcagtc
agatatatgttccacaaccccgaagacgtgaaatggttcaagcctgttgaagtatggtca
aaatgcgggcgtcgtggtcgcgtgaaggaaccagtaggcacacatggggcaatgaaatgc
atattcaatggagtggttcaacaacatgacgtagtgtgcatgaacttgtacaagcgcgct
tatcccaagtggcctgaacgtctgtacccacagcttctctga

  All links  
Gene (22)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

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