KEGG   Arabidopsis thaliana (thale cress): AT1G55490
Entry
AT1G55490         CDS       T00041                                 
Symbol
CPN60B
Name
(RefSeq) chaperonin 60 beta
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT1G55490 (CPN60B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G55490 (CPN60B)
   03110 Chaperones and folding catalysts [BR:ath03110]
    AT1G55490 (CPN60B)
   03029 Mitochondrial biogenesis [BR:ath03029]
    AT1G55490 (CPN60B)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ath04147]
    AT1G55490 (CPN60B)
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     AT1G55490 (CPN60B)
Messenger RNA biogenesis [BR:ath03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AT1G55490 (CPN60B)
Chaperones and folding catalysts [BR:ath03110]
 Heat shock proteins
  HSP60 / Chaperonin
   AT1G55490 (CPN60B)
Mitochondrial biogenesis [BR:ath03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    AT1G55490 (CPN60B)
Exosome [BR:ath04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   AT1G55490 (CPN60B)
  Exosomal proteins of other body fluids (saliva and urine)
   AT1G55490 (CPN60B)
  Exosomal proteins of breast cancer cells
   AT1G55490 (CPN60B)
  Exosomal proteins of colorectal cancer cells
   AT1G55490 (CPN60B)
  Exosomal proteins of bladder cancer cells
   AT1G55490 (CPN60B)
SSDB
Motif
Pfam: Cpn60_TCP1
Other DBs
NCBI-GeneID: 841996
NCBI-ProteinID: NP_001320638
TAIR: AT1G55490
UniProt: P21240 A0A178W724
Position
1:complement(20715563..20719261)
AA seq 600 aa
MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSSFGRRQSVCPRPRRSSSAIVCAAKELH
FNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDP
VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK
ALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKSAENN
LYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIRGGYP
ILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIREEVG
LSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLN
ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKV
DAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATG
KYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYGY
NT seq 1803 nt   +upstreamnt  +downstreamnt
atggcgtcaactttcactgccacatcttctattggttcaatggttgctccgaatggtcac
aaatctgataagaaacttatcagcaagttgtcttcaagctcatttggaaggagacaaagt
gtgtgtcctagacccagaagatccagttctgcaattgtgtgcgcagcaaaggaattacat
ttcaacaaagatgggactaccattaggagacttcaagctggtgtcaacaagctcgcagat
cttgttggtgttacacttggacccaaaggacgaaatgttgttcttgagagcaagtatgga
tcaccacgaattgttaatgatggtgtgactgttgcaagagaggttgagttggaagacccg
gttgagaacattggcgctaagcttgtgaggcaagcggctgccaaaaccaatgacttggct
ggtgacggtacaacaacatctgttgttcttgcacaaggttttatcgctgagggtgtcaag
gtggtagctgctggtgcaaaccctgttttgatcaccagaggtattgagaagacagcaaag
gctttggttaccgagctcaagaaaatgtctaaggaggttgaagacagtgaacttgcagat
gttgcagctgttagtgcgggtaacaacgacgaaattggaaatatgattgctgaagcaatg
agcaaagtgggcaggaaaggtgtggtgacccttgaggagggtaaaagtgccgagaacaac
ctctacgtcgtagaaggaatgcaatttgaccgtggttatatctctccttactttgtgaca
gacagcgagaaaatgtccgtcgagttcgacaattgcaagttacttctcgttgacaagaaa
attaccaatgcaagggatcttgttggtgttttggaggatgcaattagaggcggataccca
atattaattattgctgaagacattgaacaagaagctttagcgactcttgttgtaaacaag
cttagaggtacactgaagatagcagctctcagagctccagggtttggagagcgcaagagc
caataccttgatgatattgccattctaactggagcaactgtgatccgtgaggaagttggt
ctttcacttgacaaagctggaaaagaggttcttggtaatgcttcaaaggttgtcctcaca
aaggagacctcgaccatagtgggtgatggaagcacacaggatgcagtgaaaaagcgtgtt
acacagattaaaaatcttattgagcaagcggagcaagattacgagaaggagaaactcaat
gagagaattgcaaagctctctggtggagttgctgtgattcaggttggagcacaaactgag
acagaactcaaagagaagaagttgagagttgaagatgctcttaatgcaacaaaggccgct
gtcgaggaaggtattgttgttggtggtggttgcactctgcttcgtcttgcttccaaggtt
gatgccattaaagccacgcttgataatgatgaagaaaaggttggagcggatatagttaaa
agagcactaagttaccccctaaaactaatcgccaagaatgctggtgttaatggaagtgta
gttagcgagaaggtgctttccaacgataacgtgaaattcggttacaatgctgcaaccggc
aagtacgaggatttgatggctgcaggaatcatcgatccaacaaaggttgtgagatgttgc
ttggaacacgcagcttcggttgcaaagactttcttgatgtcggactgcgttgttgttgag
atcaaggaacctgaaccagttcccgtcggcaacccaatggacaactcaggatatggatac
taa

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (3)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (1)   
   Pfam (1)   
All databases (39)   

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