KEGG   Arabidopsis thaliana (thale cress): AT2G25170
Entry
AT2G25170         CDS       T00041                                 
Symbol
PKL
Name
(RefSeq) chromatin remodeling factor CHD3 (PICKLE)
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    AT2G25170 (PKL)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ath03036]
    AT2G25170 (PKL)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    AT2G25170 (PKL)
  Chromatin remodeling factors
   NuRD complex
    AT2G25170 (PKL)
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like Helicase_C Chromo DUF1087 ResIII HDA2-3 PHD Chromo_MIT1 CHDCT2 HTH_Hrp3 Myb_DNA-binding zf-HC5HC2H DEAD PHDvar_NSD C1_1 PHD_2 PHD-1st_NSD PHD_4 zf-ANAPC11 C1_2 zf-HC5HC2H_2
Other DBs
NCBI-GeneID: 817055
NCBI-ProteinID: NP_001324291
TAIR: AT2G25170
UniProt: Q9S775
Position
2:10713807..10724106
AA seq 1384 aa
MSSLVERLRIRSDRKPVYNLDDSDDDDFVPKKDRTFEQVEAIVRTDAKENACQACGESTN
LVSCNTCTYAFHAKCLVPPLKDASVENWRCPECVSPLNEIDKILDCEMRPTKSSEQGSSD
AEPKPIFVKQYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQMESFNNSED
DFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNEIQRFKDV
NSRTRRSKDVDHKRNPRDFQQFDHTPEFLKGLLHPYQLEGLNFLRFSWSKQTHVILADEM
GLGKTIQSIALLASLFEENLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAV
IREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMI
VDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ
EEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFT
RNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLL
DKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAK
NSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLI
NRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFASEDDEAGKSG
KIHYDDAAIDKLLDRDLVEAEEVSVDDEEENGFLKAFKVANFEYIDENEAAALEAQRVAA
ESKSSAGNSDRASYWEELLKDKFELHQAEELNALGKRKRSRKQLVSIEEDDLAGLEDVSS
DGDESYEAESTDGEAAGQGVQTGRRPYRRKGRDNLEPTPLMEGEGRSFRVLGFNQSQRAI
FVQTLMRYGAGNFDWKEFVPRLKQKTFEEINEYGILFLKHIAEEIDENSPTFSDGVPKEG
LRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRILERFPGLRSGKIWKEEHDKIMIRA
VLKHGYGRWQAIVDDKELGIQELICKELNFPHISLSAAEQAGLQGQNGSGGSNPGAQTNQ
NPGSVITGNNNASADGAQVNSMFYYRDMQRRLVEFVKKRVLLLEKAMNYEYAEEYYGLGG
SSSIPTEEPEAEPKIADTVGVSFIEVDDEMLDGLPKTDPITSEEIMGAAVDNNQARVEIA
QHYNQMCKLLDENARESVQAYVNNQPPSTKVNESFRALKSINGNINTILSITSDQSKSHE
DDTKPDLNNVEMKDTAEETKPLRGGVVDLNVVEGEENIAEASGSVDVKMEEAKEEEKPKN
MVVD
NT seq 4155 nt   +upstreamnt  +downstreamnt
atgagtagtttggtggagaggcttcgcatacgatctgataggaaaccagtttataaccta
gatgattctgatgatgacgacttcgttcctaaaaaagatcgaacctttgagcaagtcgag
gctattgtcagaactgatgcgaaagaaaatgcatgtcaggcttgtggggaaagtactaat
cttgtaagctgcaatacatgcacttatgcgttccatgctaaatgcttagttccacctctt
aaagatgcttccgtggaaaattggagatgccctgaatgtgttagtcctcttaacgagata
gataagatattggattgtgaaatgcgtcctacaaaatctagtgaacaaggttcctccgat
gcggaaccgaagccaatttttgtgaaacagtatctcgtgaagtggaagggattatcatac
cttcactgctcttgggtgcctgagaaggagttccagaaggcttataagtcaaatcatcgt
ttaaaaaccagagtgaacaattttcaccgtcaaatggagtcattcaataacagcgaagat
gattttgttgccatacgtcctgagtggaccactgttgatcggattcttgcctgcagagag
gaagatggggagctggaatatcttgtcaaatataaagagctatcctatgatgaatgttat
tgggagtcagaatcagacatctcaaccttccagaatgaaattcaaaggttcaaggatgta
aattctagaactcgcagaagtaaagatgttgaccataaaagaaatcccagagactttcaa
cagtttgatcatactcctgaattcctcaaaggcttgttacatccataccagcttgaggga
cttaattttttgcggttctcgtggtcaaaacagacgcatgtaatccttgctgatgaaatg
ggactaggcaagacaattcaaagcattgcccttttagcttcactttttgaggagaacctc
attccgcatttggtaattgctcctctatcgactctgcgtaactgggagagagagtttgcc
acatgggccccacagatgaacgtggttatgtattttggcactgcgcaagctcgagcagtt
atcagagaacatgagttttacttatcgaaagatcaaaaaaagatcaagaaaaagaaatct
ggacaaataagtagcgaaagcaagcaaaaaagaatcaagtttgatgtcctcctcacatcg
tatgagatgatcaacctagattcagcagttctaaaaccaattaagtgggagtgcatgatt
gttgatgaaggtcatcgactgaaaaataaggattcaaagctgttctcttcattgacacag
tattcaagtaaccaccgtattcttctgacaggaacaccacttcagaacaacttggatgaa
cttttcatgctcatgcattttcttgatgcggggaagtttggaagtttggaggagttccag
gaggagttcaaagatattaatcaagaggagcagatctcaaggttgcacaaaatgttggct
ccacatttgctcagaagggtaaaaaaagacgtaatgaaagacatgccccccaaaaaggag
ctcattttgcgtgttgatctgagcagtctgcagaaagaatattacaaagctatttttacc
cgtaattatcaagtattgacaaaaaagggaggtgctcaaatttcccttaataacattatg
atggaattacgaaaagtatgctgccatccttatatgctagagggtgttgagccagttatt
cacgacgcaaatgaagctttcaaacaacttttggagtcttgtggaaagctgcaacttcta
gataaaatgatggtcaaactgaaagagcaaggacacagagtcctaatatacacacagttt
cagcatatgctggacttacttgaagactactgtacccataagaaatggcagtacgagcga
attgatggaaaggttggcggagctgagcggcaaatacgcatagatcggttcaatgccaaa
aattctaacaagttttgttttttgctctccacaagagctggtggcttaggaataaatctt
gcaacggctgatacagtaatcatttatgacagtgactggaatcctcatgctgatcttcaa
gcaatggctagagctcatcgacttggccaaacaaataaggtgatgatttataggctcata
aaccgaggcaccattgaagaaaggatgatgcaattgactaaaaagaaaatggttctagag
catcttgttgttgggaaactcaaaacacaaaacattaatcaggaagagttagatgacatc
atcaggtatggatcaaaggagctttttgctagtgaagatgatgaagcaggaaagtctgga
aaaattcattatgatgatgcggctatagacaaattgcttgatcgtgatctcgtggaggca
gaggaagtctcagtggatgatgaagaggagaatggattcttaaaggctttcaaggtggct
aattttgaatatatagatgaaaatgaggcagcagcattagaggcacagagagtcgctgct
gaaagcaaatcttcagcaggcaattctgatagagcaagttattgggaagagttgttaaaa
gataaatttgagctgcaccaggctgaggagcttaatgctcttggaaaaaggaagagaagt
cgcaagcagttggtatccattgaagaagatgatcttgctggtttggaagatgtgagctct
gatggagatgaaagttatgaagctgagtcaacagatggtgaagcagcaggacaaggagtt
cagacgggtcgacggccgtacagaagaaagggtcgcgataatttggaaccaactccgttg
atggaaggtgaggggagatctttcagagtactgggtttcaaccagagtcaaagggccatt
tttgtacagactttgatgaggtatggagctggcaattttgattggaaggagtttgttcct
cgcttaaagcagaagacctttgaagaaataaatgaatatggaatactcttcttgaagcac
attgctgaagaaatagacgagaattctccaaccttttcagatggtgtgcccaaggaagga
cttagaatagaagatgttctagtcagaattgctcttctgatactagttcaggagaaggtg
aaatttgtagaagatcatccagggaaacctgttttcccctctcgcattcttgaaagattc
cccggactgagaagtggaaaaatttggaaggaggaacatgacaagataatgatacgtgct
gttttaaagcatgggtacggacggtggcaagctattgttgatgacaaagagttggggatc
caagagcttatctgcaaagaattgaatttccctcacataagtttgtctgctgctgaacaa
gctggtttgcaggggcagaatggtagtgggggctctaatccgggagcacagactaaccag
aatcctggaagcgttattactgggaacaataatgcttctgctgatggggctcaagtaaac
tcgatgttctattatcgggacatgcagagacgacttgttgagtttgtgaaaaagcgagtt
ctgcttttggagaaggcgatgaattatgaatacgcagaggaatattatggacttggtggc
tcatcatctatccctactgaagaaccagaagctgaaccaaagatcgctgacacagtggga
gtgagctttattgaggttgatgatgaaatgcttgatggacttcctaagactgatcctatc
acttcagaagaaattatgggggctgctgttgacaacaaccaagcgcgggtcgaaatagct
caacattataaccagatgtgcaaacttcttgatgagaacgctcgggaatcagtccaagca
tatgtaaacaaccaaccaccgagtaccaaggtgaatgagagcttccgtgcactcaaatct
atcaatggtaacattaacacaatcctttcgattacatctgatcaatccaagtcacatgaa
gacgacaccaagccagacctaaacaatgttgagatgaaggacacggccgaagaaacaaaa
ccgttaagaggtggcgtcgtcgatctgaatgtggtggagggagaggagaacattgctgaa
gctagtggaagtgttgatgtaaaaatggaagaagccaaagaagaagagaagccaaagaac
atggtcgttgattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (22)   
   Pfam (22)   
All databases (69)   

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