KEGG   Arabidopsis thaliana (thale cress): AT2G35340
Entry
AT2G35340         CDS       T00041                                 
Symbol
MEE29
Name
(RefSeq) helicase domain-containing protein
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT2G35340 (MEE29)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT2G35340 (MEE29)
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     AT2G35340 (MEE29)
Spliceosome [BR:ath03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    AT2G35340 (MEE29)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    AT2G35340 (MEE29)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N AAA_22 DEAD AAA_19 AAA_30 PWI nSTAND3 T2SSE AAA_16 AAA_7 Flavi_DEAD AAA_23 ABC_tran
Other DBs
NCBI-GeneID: 818101
NCBI-ProteinID: NP_181077
TAIR: AT2G35340
UniProt: F4IJV4
Position
2:14872265..14879739
AA seq 1044 aa
MGSNDLNTWVSDKLMVLLGFSQTAVVQYLIAMAKQSKSPGELVRELVECGFSLSGDTRAF
AEEIYARAPRKTPGVNLYQQQEAEAAMLLKKQKTFSLLEADHDEDENNVKKQSASKTGKS
DKGQKRFRKKSEQLEDDDDEVVIVREDKRNVRRKVSEDEDDGTESEEERLRDQREREELE
QHLRERDTARTRKLTEPKMSKKEQEEFVRRDSAVDKGDIESLRKFSWQEYMKKRKQKKVL
ELKDDIEDEPYLFGDEKLTEREIREFRYKREIYELIKKSTQEEDNVGEYRMPDAYDQQGS
VDQEKRFAVSVQRYRDMGSAEKMNPFAEQEAWEDHQIENAALKFGAKNKEVSDNYEFVFE
DQIDFIKASVLAGDNYEDEMHAKPSQDSAGKSAFHMLQEDRKALPIYTYRDQLLNAVKDH
QVLIIVGETGSGKTTQIPQYLHEAGYTKLGKVGCTQPRRVAAMSVAARVAQEMGGKLGHE
VGYSIRFEDCTSEKTILKYMTDGMLLRELLGEPDLGSYSVIIVDEAHERTLRTDILFGLV
KDIARARPDLKLLISSATMDAEKFSDFFDQAPIFRFPGRRYPVDICFTTAPEADYMDAAI
TTVLTIHVKEPLGDVLVFLPGQEEIEAVEENLKHKIRGLGTKIRELIICPIYANLPSELQ
AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLVTPISK
ASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVLSLKSLGIHNLL
NFDFMDPPPSEALIKSLELLFALGALNQLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKC
SDEIISIAAMLSIGPSIFYRPKDKQVHADNAMKNFHVGNVGDHIAFLKIYNSWKETNYST
QWCYENYIQVRSMKRARDIRDQLEGLLERVEIDVSSNANELDSIRKSIVAGFFPHTAKLQ
KNGSYRTVKHPQTVHIHPASGLSQVLPRWVVYHQLVLTSKEYMRQVTELKPEWLIEIAPH
YYQLKDVEDATSKKMPKTSGRAVV
NT seq 3135 nt   +upstreamnt  +downstreamnt
atggggagcaatgatttgaacacctgggtttcggacaagttgatggttctgctaggcttt
tcacaaactgctgtcgtgcagtatctaattgcaatggctaaacaatcaaaatcaccaggt
gaactcgtccgtgaattggtggaatgcgggttttctttgtccggtgatacccgcgcgttc
gcagaagaaatttatgctagagctccccggaaaacccctggagtgaatctctaccagcaa
caggaagcagaggcagcgatgctgttgaagaagcagaaaactttttcccttttagaggct
gatcatgatgaagatgaaaacaatgtgaagaaacaatctgcttcgaaaaccggaaagtca
gataaaggccaaaagaggttcaggaagaaaagtgagcaattggaagacgacgatgatgag
gtagtgattgttagagaggacaaaaggaatgttaggagaaaggtttccgaagacgaggat
gatggcactgagtctgaagaggaaagattacgtgaccaaagggagagagaagaactagag
cagcacctaagagaacgagatactgcacggacacgaaagctaaccgagccaaaaatgtca
aagaaagagcaagaagagtttgttcgaagagatagtgctgtagacaagggtgatattgaa
tccttaaggaaattctcatggcaagaatatatgaagaaaaggaaacagaagaaagtacta
gagctaaaggatgatatagaagatgaaccatacctttttggagatgaaaagctcactgaa
agagaaattcgtgaatttagatacaagagagaaatctatgagctcataaagaaaagtaca
caagaagaagataatgtaggagagtatagaatgccggatgcatatgatcaacagggaagt
gttgatcaggagaagaggtttgctgtttctgtacaacggtacagggacatgggttccgca
gagaaaatgaacccctttgcagagcaagaagcttgggaggaccatcagattgaaaacgca
gcattaaaatttggtgcaaagaataaggaggtctcagacaattacgagtttgtatttgaa
gaccaaatagacttcataaaggcatctgtgttggctggtgataattatgaagatgaaatg
catgctaaaccatctcaagattctgctgggaaatcggcttttcatatgcttcaggaggat
agaaaagctctgccaatttatacatatcgtgatcaacttcttaatgctgtgaaagatcat
caggttcttatcattgtgggggaaacgggttctggcaagactacacagataccccaatat
cttcacgaagctggttacacaaagcttggaaaggttggttgtacgcagcctcgaagagtt
gcggctatgagtgtggctgctcgtgttgctcaagagatgggtggtaaacttgggcatgag
gtcggctattccattcgatttgaggattgtacgtctgagaaaacaattctgaaatatatg
actgatggaatgcttttgcgtgagttgcttggtgagccagatctgggcagttacagtgtt
atcatcgtggatgaggcgcatgaaagaactttgcgcaccgacatactatttggattagtg
aaggatatagcacgggctcggcctgatctgaagttattgatatccagtgcaaccatggat
gcagagaagttttctgatttttttgaccaagcccctatcttcaggttcccaggaagaagg
tatcctgttgacatttgctttactactgcacctgaagctgattacatggacgcagcaata
actactgtgcttacgatacatgtgaaggagccacttggggatgttttggtcttcctccca
ggtcaagaggaaattgaagccgtagaagagaacttgaagcacaagataagaggtttgggt
acaaagatccgcgaactcattatatgcccaatttacgctaaccttccaagtgagctccaa
gcaaaaatatttgaaccaactcctgaaggggcacgaaaagtcgtgctagcaactaatatt
gctgaaacatcattgaccatcgatggtataaagtatgtcgttgatccaggctttagcaag
atgaaatcctataaccctagaacagggatggaatctttgcttgtaacgcctatctctaag
gcttcagcgactcaacgaactggtcgagctggaagaaccagtccagggaagtgttaccgc
ctgtacacggcgtttaattactacaatgacttggaggacaataccgtacctgaaatacaa
aggactaatcttgctagtgtggtgctttctttgaagagtcttggtattcataatctgctg
aactttgactttatggaccctccgccttctgaagctcttataaagtccttagagctgctc
tttgctctgggtgctctcaatcagcttggcgaattgactaaagctggtagacggatggca
gagtttcctcttgatccaatgttgtcgaagatgattgttgtttctgacaaatacaaatgc
tccgatgagattatatcaattgctgctatgttgtccatcgggccttctatcttttaccgc
cccaaggacaagcaagttcacgctgacaatgcaatgaagaattttcacgttggaaatgtc
ggtgatcacattgctttcctgaagatttacaattcgtggaaggaaacgaactactcaaca
caatggtgctacgagaactatattcaggttcggagtatgaaaagagccagagatatccgt
gatcagttggagggtcttctcgagagagttgaaatagacgttagctcaaacgcgaatgag
ttggattcaataagaaaatccattgtagctggtttctttccacacactgcgaagctacag
aagaatggatcatatcgaacagtgaagcatccccaaaccgtacacatacatccagcctct
ggcttatctcaggtattgccgagatgggttgtatatcatcaactagtccttacctctaag
gaatacatgcgacaggtaacagagttaaaacccgagtggttgattgagatagctccacac
tattatcagctcaaggacgttgaagatgctacatccaagaaaatgcccaaaaccagtggc
cgagctgtggtgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (16)   
   Pfam (16)   
All databases (52)   

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