KEGG   Arabidopsis thaliana (thale cress): AT2G40770
Entry
AT2G40770         CDS       T00041                                 
Name
(RefSeq) RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein
  KO
K15710  E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.- 2.3.2.27]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ath04121]
    AT2G40770
Enzymes [BR:ath01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     AT2G40770
Ubiquitin system [BR:ath04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    AT2G40770
SSDB
Motif
Pfam: SNF2-rel_dom SHPRH_helical-1st Helicase_C SHPRH_helical-2nd zf-C3HC4 zf-RING_UBOX PHD RING_XB3-XBAT31 PHD_5 zf-RING_2 SVIP TPR_1 TPR_10 TPR_2 RNPP_C TPR_12 zf-C3HC4_2 zf-RING_5 zf-C3HC4_4
Other DBs
NCBI-GeneID: 818674
NCBI-ProteinID: NP_001318395
TAIR: AT2G40770
UniProt: F4II36
Position
2:complement(17013269..17021606)
AA seq 1664 aa
MGRRKQSKPQRAVGLITPTGSESDRNQLPGDEAEGSGDKNVEDIDKPYYVNICLSSRVSE
QQQNFDLAEVVLTNFSVRERVGSSSTFTKPIEVDHDLDCSLRFRLCNVTNFVDRIKLGHW
PVLSSSDITLELVDNKVSDDEVGSVIWSASFDGPGEGVSGLAHLASIKFLTLRLMPGNEG
LLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGTRFNVKDI
ESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAMLGDDIADLLPELRPYQRRAAYWMV
QRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYFSPRIQGGIL
ADEMGLGKTVELLACIFSHRKPAEDEISVSNGSSVTDVLNAGLRRLKRERVECICGAVSE
SHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKSKKDATEIIVREGE
YICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASL
SEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFW
WRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVS
RWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECVSWLKFSAIE
EHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCH
PQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLIVALNGIAAIAMLKQEFSEA
VSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKSYGGKLSASGRPETKIDVKD
DDHHRASKRQRINELESLTHDSSETVHQREAIAPDNGLKKDGECHEECKTLDIVCDTLKV
KYLSAFNSKLSAAQHEFKKSYNQVSESLSNMGKQRSVWWLDALQLTEQNKDFSSELTRKI
EEALHGNLNNSSSSRESSRFRTIHGMKLHLQTCMDMLERSRKKVIDRILEIDQTMEKPKL
EDIERISNCKYCNKNSDGPPCIHCELDELFQEYEARLFRLNKSRRGVMEIAAAEETVHLQ
KKRDARNLFLFGLSSRSKDLNASRGDDEEPTKRNAGDIVVLSKSPSETEIVLGVIRNHCK
THLDRESKLAATKHLHTLEVMRKEYVHARVLARDQAQLLRAYDEINMSTMRLQLRESEDD
TSIYALGRDELDVASVLNTNDKFMAQSSLLSIKGKLRYLKGLMKSKQKQESESPDLSSPI
HETVDASDPAEQESENLLKRDEACPICHEILRNQKMVFQCGHSTCCNCFFAMTERKSVQE
TLQKWVMCPICRQHTDVRNIAYADDRRNSSSSDQDHKDSEASLVVQGSYGTKIEAVTRRI
LWIKSSDPQTKVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQ
KTNSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEK
PTLVHRFLVSGTVEESIYKLNRNKNTNLSSFSSRNTKNQDQQFLTLKDLESLFASPTAET
AEMEQNPGERQENLRDLPPSVAAALAAERRMKESNASSSTTNAS
NT seq 4995 nt   +upstreamnt  +downstreamnt
atgggtaggagaaagcaatccaagccccagcgtgcagtgggtttgatcactccaactggt
tctgaatccgatagaaatcaattacccggcgacgaagctgagggttcaggggacaagaat
gttgaagatatcgataagccgtattatgtgaacatatgtttaagtagtcgagtttcggag
cagcagcagaactttgatttagctgaagttgttctaacgaattttagtgtaagagaacgt
gtaggaagtagtagtacattcacaaaacctattgaggttgatcatgatctggattgctcg
ttacggtttcggctttgcaatgtgactaattttgttgatcggattaagcttggtcactgg
ccggttttgtcttcgagtgatataactttggaattggttgataataaggtgtctgatgat
gaggttgggtcagtgatttggtctgcaagttttgatggtccaggtgaaggggtttcgggt
cttgctcatttggcaagtataaagtttttgactttaaggctcatgcctggtaatgaggga
ttgttgtctcctagagttagagttgagatgcttcagcaggcttttgatgcatgtgattct
cttcttgagaatacaaggcagatttggaaaaagagtatgattcatgtcatgtcttggttg
aggccagaggtaatgacatcagaggctaggtatgggacaagattcaacgtcaaggatatt
gagtcatcagttgtgacggaagatgaaactttggactctagtaagcagtctagttttgat
gctgctgctttttatgaagccataaagccatcaaagacggatgcaatgcttggagatgac
atagctgatttgctcccagaacttaggccgtaccaacgacgggcagcttattggatggtt
cagcgagagagaggcgatccaataacgttgggagacaaggaagacaaccaattcatttca
cctttgtctatctccgtgggattccttgactctgctacaaaaatgttcttgaacccattc
agtgggaatatctcattgacaccagagtatttttcacctcgaattcagggcggtatcctt
gctgatgaaatgggattgggaaaaacggtggaactacttgcttgtatcttttctcatcga
aaaccagcggaggatgaaatttctgtgtctaatggttcatcagttactgatgttttgaac
gctggcttgagaagattgaaaagagaacgtgttgagtgcatatgtggagctgtcagtgaa
agtcacaaatacaaaggagtttgggtacagtgtgacctttgtgatgcttggcagcatgcc
gactgtgtaggttattcacctaaagggaaaggtaagaaggatagtcaacatattgatgaa
aaagcatctcaaaagaagagcaaaaaggatgcaacggaaattattgtcagagaaggtgaa
tatatttgccaaatgtgctctgaacttctacaagtcactgcctctcccatctctacgggt
gccactcttattgtctgtccagctcctatattaccgcaatggcattccgagattacacgc
catacacgcttgggatctctcataacatgtatctatgaaggtgtgaggaacgcctcactt
tctgaagaacctatgattgacattactgaacttctcaatgcggacattgttttaactacg
tatgatgtccttaaagaggacttgacacatgacttcgacaggcatgatggtgaccggcac
tgtcttagattccagaaaaggtaccctgttattccgactccactcaccagaatattttgg
tggaggatttgtttggatgaggcccagatggtggagagcaatgcagctgctgcaacagag
atggcgttgagattatacaccaaacaccgttggtgtatcaccggaactcctatacaacgc
aaacttgatgacttatttggactattgaagtttcttaaagcaaatcctttcgatgtttca
agatggtggattgaagttataagagacccatatgagaggcgagacacaaaggccatggaa
tttacgcataagtttttcaaacaagttatgtggcgttcttcaaaagtccatgtggctgat
gagttgcaacttccacctcaagaggaatgcgtctcgtggcttaaattttccgcaattgaa
gaacacttttacagtagacagcatgacacttgtgtgagttatgctcgtgaagttatagaa
actttgaaacgtgatattctcaaaagaggtcatacttcttctgataatcctttagtcact
catgctgaagctgcaaaactgttgaactcgctcttgaaattgcgccaagcttgctgccac
cctcaagtaggaagttcaggtttacgctctttgcaacaaagtccaatgaccatggaagaa
attttaatggtccttgtgaaaaagacccagagcgagggagaagaagctcttagagtgtta
attgttgcattaaatgggattgctgctattgccatgcttaagcaagaattttctgaagct
gtgtccttatacaaggaagcattaagtataactgaagaacacgccgaggattttcgtctt
gatccattgttaaatattcacattcttcacaatttagctgagatactaccaatggccaaa
agctacggtggaaaactttctgcatcaggaaggcctgaaacaaaaatagatgtaaaagat
gatgatcatcatcgtgcatcgaagaggcaaaggatcaatgagctcgagagtttaactcat
gattcttcagaaactgtacatcagcgggaagctattgctccagacaatggtttaaagaag
gatggagagtgtcatgaagaatgcaaaactctggatatagtttgtgacacactgaaggtt
aagtatttatccgcattcaactcaaagctttctgcagcacagcacgaattcaaaaaatca
tacaatcaggtttctgagtcgttgagcaatatggggaaacaacgttcagtttggtggttg
gatgccctgcaacttactgaacagaataaagacttctctagcgagttgacaaggaagatt
gaagaggccctccatggaaacttaaacaattcaagctcctccagagagagttctcgattt
agaactatacatggcatgaaacttcatctgcagacgtgtatggatatgctggagagatct
agaaagaaagtgatagataggattctagaaattgatcagactatggagaaaccaaagttg
gaggatattgagcgtattagcaactgcaagtattgcaataagaatagtgatggccccccg
tgtattcattgcgagctagatgaactattccaggaatatgaggctaggcttttccgtctt
aacaaatctcgcaggggagtaatggaaattgcggctgctgaagagacggtacatttgcag
aagaagagagatgctcgtaatctttttttatttggtttatcatcaagaagcaaggatcta
aatgcatcacgtggtgatgacgaggagccaaccaaaagaaatgctggtgacattgtggtt
ctttcaaaatctccatctgagacggaaatagttcttggagtgataagaaaccattgcaaa
actcatttagatagggaaagcaaattggcagctacaaaacatttgcatacccttgaggtg
atgcgaaaggaatatgtacatgcaagggtcttagctagggatcaagctcaactcctacgt
gcctatgatgagattaacatgtcaacaatgagactacagcttagagaatcggaagatgac
acatcgatctatgctttgggccgggacgagttagatgttgctagtgtgctgaacacaaat
gacaaatttatggctcaatcctcgttgcttagtataaaagggaaacttcgttatttgaag
ggtttgatgaaatccaaacagaaacaagaatccgagagtccagatctttcctcaccaata
catgaaacagtcgatgcttcggatcctgctgaacaggaaagcgaaaacctgcttaagaga
gatgaagcatgcccgatttgtcatgaaattctaaggaatcagaagatggttttccagtgc
gggcattccacttgctgtaactgcttttttgctatgactgagcgcaaatcagttcaagaa
acgctgcaaaagtgggtgatgtgtccaatatgcaggcagcatacagatgttagaaatatt
gcatatgctgatgatagaagaaacagttcttcgtcagatcaagatcacaaagacagtgaa
gcatcattggtggttcaaggttcatatggaacaaagattgaagctgttactagaagaatc
ttatggatcaagtcaagtgacccacaaacgaaggttcttgttttctccagctggaacgat
gttcttgatgtgttggaacatgccttcgctgcaaatagcatcacctgcatccggatgaaa
gggggcaggaaatcacagacagccattagcaaattcaagggatctgagaaagaaacccaa
aagacaaactcccatcaaaaagaggaaaaatcgattcaagtgttattgcttttggtgcag
catggtgccaacggtcttaatcttctagaagcacagcatgttattctggtggagccactt
ctaaatccagctgcggaagcgcaagctgttgggcgtgttcaccgaattggacaagagaag
cctactctagttcatcggtttctggtatcgggcacagtggaagagagcatctacaaactg
aacaggaataagaatacaaacttaagttcatttagcagcaggaatacaaagaatcaagat
caacagttcttgacactaaaagatcttgaatctctatttgcttcaccaacagcagaaaca
gcagagatggaacaaaacccaggagagagacaggagaatctgagagatctaccaccctca
gtcgctgcagcattagcagccgagaggagaatgaaggaaagtaatgcatcctcatcaact
acaaacgcatcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (19)   
   Pfam (19)   
All databases (84)   

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