KEGG   Arabidopsis thaliana (thale cress): AT3G06980
Entry
AT3G06980         CDS       T00041                                 
Name
(RefSeq) DEA(D/H)-box RNA helicase family protein
  KO
K13179  ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT3G06980
   03009 Ribosome biogenesis [BR:ath03009]
    AT3G06980
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AT3G06980
Spliceosome [BR:ath03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    AT3G06980
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  90S particles
   Helicases
    AT3G06980
  Pre-60S particles
    AT3G06980
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_C_2 Cas3-like_C_2 SNF2-rel_dom
Other DBs
NCBI-GeneID: 819883
NCBI-ProteinID: NP_187354
TAIR: AT3G06980
UniProt: Q8GUG7 A0A178V8Q3
Position
3:2201432..2205171
AA seq 781 aa
MLARAPPPYFNFPARNNTICNRNEIVRLFRNGGGVVARGAGFTRRPLETSSSYDDSTDDG
FVIISAADKENEFAPPPSSDLLSSIPSESARRNGSRSRGLTASFGRLKAQKVKALVGKVT
QKKQHMSHNEEEDEDDASDENYSADEGFGSSSILDLMRKKLAMKAIPRSGKSAERNEVKR
ASKVRESRESRRDLDRLEGDDEDVDEVSNPDRFTDNQRAGSRSSYSKGGYAANSRGKGDR
LSVARDLDSFEGHGRAIDEVSNPRKFNDNERAESRSSYSRDSSANSRGREDRRFVAKELD
TFQGRDKAYDEVYNPRRFTDNERGLRGGSHSKGSDTNSRGWGDRRSVVYTRDMDDWRERN
KTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQS
GSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVP
FRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFG
DDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEE
FLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDR
KERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFD
FPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRIIERNEKGHPVHDVPNAYEFT
T
NT seq 2346 nt   +upstreamnt  +downstreamnt
atgttggcgagagctccaccgccttattttaatttcccggcgaggaataatactatctgt
aatcggaatgagattgtgcggttgtttcgtaacggcggaggagtggtagctagaggagct
ggtttcactcggcgaccactggaaacttcgagctcttacgacgattccaccgatgacgga
ttcgttatcatcagtgcggcagataaggagaatgagttcgctcctccgccttcttccgat
ttactctcttcgattccgtcagaatctgcgagaagaaatggttcgcgttcgagaggtctg
actgcgagttttggaaggttaaaggcccagaaagtgaaagctcttgttgggaaggtaacg
cagaagaagcagcatatgagtcacaatgaggaagaagacgaggatgacgcctctgatgag
aattattctgcggatgaagggtttggttcatcatcaattctggatttgatgaggaagaag
ctggctatgaaggctattcctagatcaggaaaatctgcagagaggaacgaggtaaaaaga
gctagcaaagtgcgggaatctagagagtcaagaagagatttagatagattggaaggagat
gatgaagatgttgatgaggtttcaaatcctgacaggtttactgataatcagagagcaggg
tcgcggagttcatattcaaaaggtggttatgctgctaactccaggggtaagggtgatagg
ctttcggttgcaagagatttagattcatttgagggacatggtagagctattgatgaggtt
tcaaaccctcgaaagtttaatgataacgagagagcagaatcaaggagttcatattcaaga
gactcttctgctaactccaggggtagagaagataggcgttttgttgccaaagagttagat
acatttcagggacgtgataaagcttatgatgaggtttataatcctcgaaggttcactgat
aatgagagaggactcagaggaggatcacattcaaaaggctctgatactaactctcggggt
tggggtgataggcgttctgttgtatatacaagagatatggatgattggagagagaggaat
aaaaccaaggatactagggagactggcttttttagccggaaaacttttgcagaaattgga
tgtagtgaagatatgatgaaggccttaaaggaacagaattttgatcgcccggcacatatt
caggctatggctttttcaccagttattgatggaaagagttgtatcatagctgaccaaagt
ggatcaggcaagacactggcatatcttgtccctgttattcagcgtctcagggaagaagag
cttcaaggacacagcaaatcgtctcctgggtgtcctcgtgtcattgttctggtaccaact
gcagagttggcttctcaggttcttgctaactgtagatcaatatcaaagtctggggtcccg
ttccgttcgatggtagtgacgggtggcttcagacaacgaacccagctagaaaatttagag
caaggtgttgacgttttgattgcaacaccagggcgtttcacgtacctaatgaacgaagga
attttggggttgtcaaatttaagatgtgccatcttggatgaggtggatatactctttggc
gacgatgagtttgaggcagccctgcaaaatttgataaactcttctcctgttactgcacag
tatctatttgttacagcaaccttgccacttgaaatatacaacaaacttgttgaagttttc
cctgattgtgaagttgtaatgggacctcgagtgcaccgtgttagtaatgctctcgaagag
tttcttgttgactgtagtggagatgataatgcagagaaaactcctgagactgcatttcag
aacaagaaaactgctctccttcagataatggaggaaaaccctgtttccaaaactattatc
ttctgcaataagattgagacatgtaggaaagttgagaacatatttaagcgggttgataga
aaggaaagacagttgcacgtcctaccttttcatgctgcactctcacaagagtcaaggctt
acaaacatgcaagaattcacatcatctcagcccgaagaaaattcactgtttctggtttgc
actgatagagcctcccgtgggatagatttctctggtgttgatcatgtggtgctctttgac
ttcccacgtgaccccagtgaatacgtgagacgtgtaggaagaacagcaagaggggctagg
ggaaaaggaaaggctttcatctttgtggtggggaagcaagtagggttggcacggaggata
attgagcgaaatgagaaaggtcacccagttcatgatgtcccaaacgcttacgagttcaca
acctaa

  All links  
Gene (23)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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