KEGG   Arabidopsis thaliana (thale cress): AT3G13470
Entry
AT3G13470         CDS       T00041                                 
Symbol
Cpn60beta2
Name
(RefSeq) TCP-1/cpn60 chaperonin family protein
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT3G13470 (Cpn60beta2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT3G13470 (Cpn60beta2)
   03110 Chaperones and folding catalysts [BR:ath03110]
    AT3G13470 (Cpn60beta2)
   03029 Mitochondrial biogenesis [BR:ath03029]
    AT3G13470 (Cpn60beta2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ath04147]
    AT3G13470 (Cpn60beta2)
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     AT3G13470 (Cpn60beta2)
Messenger RNA biogenesis [BR:ath03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AT3G13470 (Cpn60beta2)
Chaperones and folding catalysts [BR:ath03110]
 Heat shock proteins
  HSP60 / Chaperonin
   AT3G13470 (Cpn60beta2)
Mitochondrial biogenesis [BR:ath03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    AT3G13470 (Cpn60beta2)
Exosome [BR:ath04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   AT3G13470 (Cpn60beta2)
  Exosomal proteins of other body fluids (saliva and urine)
   AT3G13470 (Cpn60beta2)
  Exosomal proteins of breast cancer cells
   AT3G13470 (Cpn60beta2)
  Exosomal proteins of colorectal cancer cells
   AT3G13470 (Cpn60beta2)
  Exosomal proteins of bladder cancer cells
   AT3G13470 (Cpn60beta2)
SSDB
Motif
Pfam: Cpn60_TCP1 KH_PARP14_2
Other DBs
NCBI-GeneID: 820549
NCBI-ProteinID: NP_187956
TAIR: AT3G13470
UniProt: Q9LJE4
Position
3:4389215..4393015
AA seq 596 aa
MASTFTATSSLGSLLAPNAIKLSSATSISSSSFGRRHNVCVRRSRPAIVCAAKELHFNKD
GTTIRKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI
GAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVN
ELKLMSKEVEDSELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLEEGKSAENNLYVV
EGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKVTNARDLVGVLEDAIRGGYPILII
AEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLD
KAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAEQDYEKEKLNERIA
KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIK
DTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKVLANDNVKFGYNAATGKYED
LMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIPEPEPVPAGNPMDNSGYGY
NT seq 1791 nt   +upstreamnt  +downstreamnt
atggcatcgacattcactgccacgtcttcccttggttcgttgcttgctcccaatgctatc
aagttgtcttctgcgactagcatctcttcaagctcgtttggaaggagacataacgtgtgc
gtcagaagatcccgtcctgccatagtatgtgcagccaaggagttgcatttcaataaggat
gggactaccataaggaaacttcagactggtgttaacaagctcgcggaccttgttggtgtc
acacttggaccaaaagggagaaatgttgttcttgagagcaagtatggatccccaagaatt
gttaatgatggtgtcactgttgcgagggaggtcgagttggaggacccggttgagaacatt
ggtgcaaagcttgtaaggcaagcagctgcaaagaccaatgacttggctggtgacggtaca
acaacatctgttgttcttgcacaaggttttattgctgagggtgtcaaggtggtggctgca
ggtgcgaaccctgtattgatcactagggggattgagaagactgcaaaggctttggttaac
gagctgaaacttatgtctaaggaggttgaagacagtgaacttgctgatgtggcagctgtt
agtgcgggtaataaccacgaagttggaagtatgattgctgaagcaatgagcaaagtgggc
aggaagggtgtggtgaccctggaggagggaaaaagcgctgagaacaacctttatgttgtg
gaaggaatgcaatttgaccgtggttatatctccccatactttgtgacagacagtgagaaa
atgtctgttgagtatgacaattgcaagttgcttcttgttgacaagaaagtaaccaatgca
agggatcttgttggggttctagaggatgcgattagaggcggatacccaatcctcataatt
gcagaagatattgaacaagaagccttagctactcttgttgttaacaagcttagaggcaca
ctgaagattgcagctctcaaagctcctggatttggagagcgcaagagccaataccttgac
gatattgccattctaactggagcaactgtgatcagagaggaagttggtctttctcttgac
aaagctggaaaagaggttctgggtaacgcttccaaggttgtcctgacaaaggaaatgaca
acaattgtgggtgatgggaccacacaagaagcagtgaacaagcgtgttgtacagattagg
aatcttattgagcaagcggagcaagactacgagaaggaaaaattaaatgagagaattgcg
aagctctctggtggagttgctgtaattcaggttggagctcaaactgagacagagctcaaa
gaaaagaagctgagagtggaagatgctcttaatgctacaaaggctgctgttgaggaaggt
attgtcgttggtggtggttgcactctgctccggcttgcatcaaaggtcgatgccatcaag
gatacccttgaaaatgatgaagaaaaggttggagcggaaattgttaaaagagcactgagt
taccctctgaaattgatagctaagaatgctggtgttaatggaagtgttgtcagcgagaag
gtgctggctaacgataatgtgaaatttggatacaatgctgcaaccggcaagtatgaagac
ctgatggctgcaggcatcatcgacccgacaaaggttgtgagatgttgcttagaacatgcc
gcctcagttgcaaagacgttcttgatgtctgactgtgtggttgttgagatcccagagcca
gagccagttcctgctggtaacccaatggacaactcaggttatggatactaa

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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