KEGG   Arabidopsis thaliana (thale cress): AT3G22270
Entry
AT3G22270         CDS       T00041                                 
Name
(RefSeq) Topoisomerase II-associated protein PAT1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT3G22270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT3G22270
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AT3G22270
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     AT3G22270
SSDB
Motif
Pfam: bVLRF1
Other DBs
NCBI-GeneID: 821797
NCBI-ProteinID: NP_188866
TAIR: AT3G22270
UniProt: F4J077 A0A5S9XET2
Position
3:7874145..7878812
AA seq 782 aa
MERSDSRDLYNFVRASSLDKNSTLFDASQYEFFGQNLDDMELGGLDDDGVIAPVLGHADD
DEYHLFDKGEGAGLGSLSDMDDLATTFAKLNRVVTGPKHPGVIGDRGSGSFSRESSSATD
WTQDAELTSWLDEQDQEAKRWSSQPQSFAHSKPLYRTSSYPQQQPQLQHYNSEPIILPES
NFTSFPPPGNRSPQASPGNLHRAPSLPGGSQLTYSAPSPLSNSGFHLSGLSQGPHYGGNL
TRYASCGPTLGNMVQPHWVTDPGHLHGDHSGLLHNLVQQQHQQLPPRNAIMSQHLLALQQ
RQSYAQLAALQSQLYSSYPSPSRKVPFGVGEVREHKHKSSHRSRKNRGLSQQTSDAASQK
SETGLQFRSKHMTSEEIESILKMQHSNSHSNDPYVNDYYHQAKLAKKSAGSKAISHFYPA
QLKDHQPRSRNSSEQHPQVHVDALGKITLPSVRRPHALLEVDSSPGFNDGSGDHKGSGKH
LEQEPLVAARVTIEDALGVLIDIVDIDRTLQNTRPQDGGAQLKRKRQILLEGLATALQLA
DPFSKTGQKSGMTAKDDIVFLRIATLPKGRKLLTKYLQLLVPGTENARVVCMAIFRHLRF
LFGGLPSDTLAAETISNLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSAGDG
ASVVLISLLERAAEVVVVPRVMHGNSNDGLWRASFDEFFNLLTKYCRSKYDTIRGQNQGS
AADVLELAIKREMPAELLRASLRHTNDDQRNYLLNFGRKPSAISESASHARGGQINSESV
RG
NT seq 2349 nt   +upstreamnt  +downstreamnt
atggagagatctgattcaagggatttgtataactttgttcgcgcttcttccttagataaa
aacagtacactctttgatgcatcacaatatgagttttttggacaaaatctggatgatatg
gaacttgggggtcttgatgatgatggagtaatcgctcctgttcttggacatgctgatgat
gatgagtatcacttgtttgataaaggagagggtgcaggtttaggatcactatctgacatg
gatgatcttgcgacaactttcgcaaagttaaacagagttgttaccggacccaaacaccct
ggagttattggtgatagaggatcaggatccttttcaagagagagttcttctgctaccgat
tggacacaagatgcagagctcacaagctggttggacgaacaagatcaagaagctaagaga
tggtcctcacagccacaatcatttgctcattcaaaacctttgtacaggacatcctcttat
cctcagcagcaaccgcagctgcagcactacaatagtgaaccgataattttaccagaatca
aattttacctcatttcccccgcctggtaacagatctccgcaggcttcacccggaaatctc
catcgcgctccttctcttcctggtggttctcagttgacctattctgcaccttccccgctg
tcaaattctggttttcatctttcaggattgtcgcaagggccccactatggtggtaatttg
actagatatgcctcgtgcggtcctacgcttggtaacatggtgcaacctcattgggtcact
gatcctggtcatctacacggagatcattctggtttattacataatctggtgcaacaacag
catcaacaattgcctcctcgaaatgctattatgtcgcaacatttgcttgccctccagcag
agacaatcatatgctcaacttgcagcgctacagtctcaactgtatagttcctatccttcg
ccatcacgtaaagtcccttttggagttggtgaagttagggaacacaaacataagtcatct
catagaagtcgaaagaatagaggactctctcaacagacatcagacgcagctagtcagaaa
agtgaaactggactgcagtttagatcaaagcacatgacttcagaagaaatagagagtata
ctcaagatgcagcattccaattcacacagcaatgatccctatgtcaatgattattaccac
caagcgaagcttgccaagaagtctgccggatctaaagcaatctctcacttctatcctgct
cagttgaaggaccaccagcctcggtcccgtaatagttctgaacagcatccacaagttcat
gtagatgctcttggtaaaattacacttccatctgtccgcaggccacatgccttgcttgag
gttgactcttctcctggttttaacgatggaagcggggatcataagggctcaggaaaacat
ttggaacaggaacctctcgttgcagctagggttacaattgaagatgctcttggagttctt
attgacatagttgacattgacaggactctccaaaacacaagaccccaggacggaggtgcc
caactcaagagaaagcggcagatcctgctagaaggattagcgacagcacttcaacttgct
gatccgttcagcaaaaccggtcagaaatctgggatgactgctaaggatgatattgtcttt
ctacgtatagcgactctccccaagggtcggaaattgcttacaaagtatctacaacttcta
gttccaggtactgagaatgctcgagttgtctgtatggctatattccgccacttgagattt
ctgttcggcggcctaccttcagatactctagcagcagagacaatatctaatcttgccaaa
gcagtcacggtttgcgttcaggccatggaccttcgagcactgagtgcttgccttgcagct
gtagtatgttcttcagagcagccacctctccgtcctatcggaagttctgctggagatggt
gcttcagttgtcttgatatctcttcttgagagagctgcggaagtagtggtggttcctcga
gtcatgcatgggaattctaatgatggtctctggagagcgtcatttgatgaattcttcaac
cttcttaccaaatactgcagaagcaagtatgacacaatccgtggacagaaccaagggagt
gcagcggatgttttggagctggcgataaagagggaaatgcccgctgagcttttacgtgcg
agtctgcgtcacaccaatgacgaccagaggaactatttattaaactttggtcgtaaacca
tcagcaattagtgagtcggcatctcatgcaaggggtggacagatcaactctgaatctgtg
aggggttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (33)   

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