KEGG   Arabidopsis thaliana (thale cress): AT3G25440
Entry
AT3G25440         CDS       T00041                                 
Symbol
LOH1
Name
(RefSeq) RNA-binding CRS1 / YhbY (CRM) domain protein
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT3G25440 (LOH1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT3G25440 (LOH1)
Enzymes [BR:ath01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     AT3G25440 (LOH1)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     AT3G25440 (LOH1)
SSDB
Motif
Pfam: CRS1_YhbY DUF948 NikR_C
Other DBs
NCBI-GeneID: 822128
NCBI-ProteinID: NP_189171
TAIR: AT3G25440
UniProt: Q67XL4 A0A7G2ENA0
Position
3:9223956..9225774
AA seq 444 aa
MGFLTAAIRVSTSAASMLLRRKSRQLGFLASSSPLFSSFNSMNRTISSCNIVCKVLHKES
LTRPMWNVSFLRSSSFHSTPARETGDDDISKSENSSSQDGDSCTKLKRKKLKGKRAVVRW
LKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPE
EHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVEL
ARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY
IPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLEL
ATDSDLSDIFETDSELEDAKTERPLFLEEFEKFPAINNREDEDFGDLGKAKSEGEENDDD
KSPNFDEVDKMFLRAAFLLKKKRR
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggggtttctgacggcggcgattagggtttcgacatcagcagcctcaatgcttctacgc
cgtaaatctcggcagctagggttcctagcctcctcctcgccgcttttttccagctttaat
tccatgaatcgcactatcagctcgtgtaatattgtgtgcaaggttttgcataaggaatct
cttactagaccaatgtggaacgttagcttcttaagatcctcttcgtttcattcaactcca
gctcgtgagaccggtgatgatgacattagcaaatctgagaacagttcgagtcaagatgga
gacagttgtactaaattaaagaggaagaagctgaaaggtaagcgtgcggttgtgcggtgg
ctaaagtttttccggtggaagaaaaagaaagaatttgaaagaatgacttctgaagaaaag
atacttaacaaactaagaaaggctcgaaagaaagaggaacggcttatggagacgatgaag
aagctggaaccttcagagtcagcagaaacgacacatgaccctgagatattgactccagaa
gaacatttttattatctgaaaatgggtttgaagtgcaagaattatgttcctgtagggaga
cgtgggatttaccaaggagtgattctgaacatgcatcttcactggaagaagcatcagacg
ctacaggttgtgatcaaaacgtttacacctgatgaagtgaaggagattgctgttgagtta
gcgaggttgactggagggattgtgcttgatgtacatgaaggtaacacgataattatgtac
agagggaagaactatgtgcaacctcctactgaaatcatgtcgccgaggattactcttccg
aggaaaaaggctttggataagtctaaatgtagggatgcgcttcgtgcggttaggaagtat
attccgaggcttgaacaggagctccagttgcttcaagcacaagctgaaacgaagcgggat
tacacgaatgtgaaggttgatgataatcaagagaggtcagaagagttgaagaagattata
gaaagaagcgaagagtgtttggaggatgagcaagaagaagatgaagcaggattagaacta
gcgacggattcagatctttcggatatttttgagactgattcggaattagaagatgcgaaa
acagagcgaccactttttcttgaggagtttgagaaattcccagctataaacaacagagaa
gacgaagactttggggatctcgggaaggctaaatcagaaggtgaggagaatgatgatgat
aagtcaccaaactttgatgaagtagataagatgtttcttcgggctgcttttcttttaaag
aagaaaagacgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (3)   
   Pfam (3)   
All databases (44)   

Download RDF
DBGET integrated database retrieval system