KEGG   Arabidopsis thaliana (thale cress): AT3G62310
Entry
AT3G62310         CDS       T00041                                 
Name
(RefSeq) RNA helicase family protein
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT3G62310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT3G62310
   03009 Ribosome biogenesis [BR:ath03009]
    AT3G62310
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     AT3G62310
Spliceosome [BR:ath03041]
 Complex A
  U2 snRNP components
   U2 related factors
    AT3G62310
 Complex B
    AT3G62310
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    AT3G62310
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  90S particles
   Helicases
    AT3G62310
SSDB
Motif
Pfam: OB_NTP_bind HA2_C WHD_HA2 Helicase_C DEAD AAA_22 AAA_19 ResIII ABC_tran nSTAND3 Cas3-like_C_2 SRP54 T2SSE AAA_7 NPHP3_N nSTAND_NTPase5 PhoH AAA_30
Other DBs
NCBI-GeneID: 825404
NCBI-ProteinID: NP_191790
TAIR: AT3G62310
UniProt: Q9LZQ9
Position
3:complement(23057240..23060731)
AA seq 726 aa
MGTERKRKISLFDVMDDPSAPAKNAKTSGLPDGGINSLINKWNGKPYSQRYYDILEKRRT
LPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVG
NLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDG
NLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKAADEA
KARFGHIEGDHLTLLNVYHAFKQNNEDPNWCYENFINNRAMKSADNVRQQLVRIMSRFNL
KMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLSNFPNCEAKRVIEKLYKKREREKEE
SKKNRK
NT seq 2181 nt   +upstreamnt  +downstreamnt
atgggtactgagagaaagaggaaaattagtctgttcgatgttatggacgatccgtctgct
ccggcgaagaacgccaaaaccagtggtcttcccgacggcggaatcaacagtctgatcaat
aaatggaacgggaagccttattcacagagatattatgacattctggagaaacggaggact
ctacctgtctggctgcagaaagaggagtttctcaaaacgttgaacaacaatcaaacccta
attctggttggtgaaaccggtagtggtaaaactactcagattccacagtttgtgatagat
gctgtggatgctgaaacatcggataagcgtaggaagtggttggttggatgcacacagcct
cgtagagttgctgccatgtctgtgtcccgtcgtgttgctgaagagatggatgtaactatt
ggggaagaagttggttacagcatccgtttcgaggactgcagtagccccagaacggttctt
aagtacttgactgatggtatgctcctgagagaagcaatggcggaccctcttctagagaga
tacaaagtcattattcttgatgaggcccacgaaaggactctagccacagatgtgctgttt
ggtcttctgaaagaagtgttgaaaaatagacctgatcttaagttagttgtgatgagtgca
actctagaagctgaaaagtttcaggattattttagcggtgctcctctgatgaaagttcct
ggtaggcttcatccagttgagatcttttacactcaggagcctgagagggactatcttgag
gctgctattagaactgttgtccagattcacatgtgtgagccacctggcgatattcttgtt
ttcttaactggggaggaggagattgaagatgcatgccgcaaaatcaataaagaggttggt
aatcttggggatcaagtggggcctattaaagtagtgccactgtattctactcttccacct
gcgatgcagcagaagatatttgatcctgctccagagcctgtaacagaaggtggtcctcct
gggagaaagattgttgtctccactaacattgctgagacttctctcaccatagatgggatt
gtctacgtcattgaccctggttttgctaagcaaaaagtctataaccctcgaatccgtgtt
gagtctttgttggtgtccccaatttcaaaggcaagtgctcaccagagatctggtcgtgcc
ggtagaacacggcctggaaaatgcttcaggctttacacagagaagagttttaataatgac
ttgcagccgcagacgtatcctgaaatattgagatcaaaccttgcaaatacagttctgacc
ttgaaaaaactgggtattgatgacttggtgcactttgattttatggatccccctgctccc
gaaacactgatgcgagccttagaagttttgaattacttgggagcactggatgatgatggt
aacttgacaaagacaggtgagatcatgagtgagttccccttggatccacagatggcaaag
atgctcatagtcagtcctgaattcaactgctcaaacgagattctctcagtttcagctatg
ctatcagtaccgaattgctttattcggcctagagaggctcaaaaagcagcagatgaagct
aaagctaggtttggacacattgagggagatcacctcacattgttgaatgtctaccacgct
ttcaagcaaaacaatgaggatccaaattggtgctatgaaaacttcatcaacaatagagcg
atgaaatctgcagacaatgttagacagcagctagtccggataatgtcaagattcaacctg
aagatgtgcagcactgattttaacagccgcgactactacatcaacataaggaaggccatg
cttgccggttatttcatgcaagtggctcacttagaacgtactggccattacttgaccgtc
aaagacaaccaagtggttcatttgcatccatccaattgcttggatcacaaaccggagtgg
gtaatctacaacgaatatgttttgactagccggaatttcatcagaactgtgacagacatt
cgtggtgaatggctagttgatgttgcttctcattattacgatctttcgaactttcccaac
tgtgaagccaaacgtgtaatcgagaagctttataagaagagagaaagggagaaggaagag
agcaagaagaaccggaaatga

  All links  
Gene (25)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (18)   
   Pfam (18)   
All databases (51)   

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