KEGG   Arabidopsis thaliana (thale cress): AT3G62840
Entry
AT3G62840         CDS       T00041                                 
Name
(RefSeq) Small nuclear ribonucleoprotein family protein
  KO
K11096  small nuclear ribonucleoprotein D2
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT3G62840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT3G62840
   03032 DNA replication proteins [BR:ath03032]
    AT3G62840
Spliceosome [BR:ath03041]
 Complex A
  U1 snRNP components
   Sm proteins
    AT3G62840
  U2 snRNP components
    AT3G62840
 Complex B
  U1 snRNP components
    AT3G62840
  U4/U6.U5 tri-snRNP components
    AT3G62840
 Complex C
  U2 snRNP components
    AT3G62840
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     AT3G62840
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 825459
NCBI-ProteinID: NP_001078331
TAIR: AT3G62840
UniProt: A0A384LL34 O22247
Position
3:complement(23235490..23236816)
AA seq 108 aa
MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV
LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK
NT seq 327 nt   +upstreamnt  +downstreamnt
atgagtaaaccaatggaagaggataccaacggaaagactgaggaggaggagttcaacact
ggaccactctctgttttgatgatgagtgttaagaataacactcaggtgttgatcaattgc
cgtaacaacaggaaactccttggccgagttagggcttttgacaggcactgcaacatggtt
cttgaaaatgtcagagaaatgtggactgaggttccgaaaaccggaaaaggaaagaagaaa
gctcttcctgttaacagagatcgattcatcagcaagatgttcctgcgtggagactcagtc
attatcgtcctcaggaaccccaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system