KEGG   Arabidopsis thaliana (thale cress): AT4G02110
Entry
AT4G02110         CDS       T00041                                 
Name
(RefSeq) transcription coactivator
  KO
K10728  topoisomerase (DNA) II binding protein 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AT4G02110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ath03032]
    AT4G02110
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT4G02110
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Replication Initiation Factors
   Other initiation factors
    AT4G02110
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-B complex
     AT4G02110
SSDB
Motif
Pfam: BRCT PTCB-BRCT BRCT_2 RTT107_BRCT_5
Other DBs
NCBI-GeneID: 828135
NCBI-ProteinID: NP_192120
TAIR: AT4G02110
UniProt: O04251 A0A654FL36
Position
4:935006..940328
AA seq 1329 aa
MQSDSGLPPKTYSGVKFALVGFNPIHGNSLRSKLVSGGGVDVGQFTQSCTHLIVDKLLYD
DPICVAARNSGKVVVTGSWVDHSFDIGMLDNANSILYRPLRDLNGIPGSKALVVCLTGYQ
GHDREDIMRMVELMGGQFSKPLVANRVTHLICYKFEGEKYELAKRIKRIKLVNHRWLEDC
LKNWKLLPEVDYEISGYELDIMEASARDSEDEAEDASVKPANTSPLGLRVGAVPAVEISK
PGGKDFPLEEGSSLCNTSKDNWLTPKRTDRPFEAMVSTDLGVAQQHNYVSPIRVANKTPE
QGMSKMETDGSTSINRSIRRHSSLATYSRKTLQRSPETDTLGKESSGQNRSLRMDDKGLK
ASSAFNTSASKSGSSMERTSLFRDLGKIDMLHGEEFPPMMPQAKFTDGSVSRKDSLRVHH
NSEASIPPPSSLLLQELRPSSPNDNLRPVMSISDPTESEEAGHKSPTSELNTKLLSSNVV
PMVDALSTAENIISNCAWDEIPEKSLTERMTENVLLQEQRSGSPKQNLSVVPNLREAAHE
LDLSDSAARLFNSGVVPMEADIRTPENSTMKGALDEVPERSVTDPVMRRSSTSPGSGLIR
MKDKQETELTTKKTAPKKSLGTRGRKKNPINQKGSIYLSEPSPTDERNVCLNKGKVSAPV
TGNSNQKEISSPVLNTEVVQDMAKHIDTETEALQGIDSVDNKSLAPEEKDHLVLDLMVNQ
DKLQAKTPEAADAEVEITVLERELNDVPTEDPSDGALQSEVDKNTSKRKREAGVGKNSLQ
RGKKGSSFTAKVGKSRVKKTKISRKENDIKANGTLMKDGGDNSADGKENLALEHENGKVS
SGGDQSLVAGETLTRKEAATKDPSYAAAQLEVDTKKGKRRKQATVEENRLQTPSVKKAKV
SKKEDGAKANNTVKKDIWIHSAEVKENVAVDENCGDVSSDGAQSLVVEKSLAKKEAAAKD
PSNAAMQLEFDDNKCKHGKEGIVERSSLQSGKKGSSSRVEVGKSSVKKTKKSEKGSGTEA
TDTVMKDVGDNSAKEKENIAVDNESRKVGSGGDQSPVARKKVAKSAKTGTKAEKESKQLR
VNPLASRKVFQDQEHEPKFFIVSGPRSQRNEYQQIIRRLKGKCCRDSHQWSYQATHFIAP
EIRRTEKFFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAINLESPKKW
RLVREKTGHGALYGLRIVVYGDCTIPCLDTLKRAVKAGDGTILATAPPYTRFLNQNTDFA
LISPGMPRDDVWIQEFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSWAEKSFNKMQ
LRADLCVYH
NT seq 3990 nt   +upstreamnt  +downstreamnt
atgcaatcggattcgggtttgcctcccaagacgtattcgggtgtcaaattcgctctcgtt
ggattcaatcccatccatggaaactcgttacggtcgaagctagtgagtggtggtggtgtt
gatgttggccaattcactcagtcatgtactcacctcatcgtagataagcttctctatgat
gatccgatttgcgttgctgctcgaaacagcgggaaggtagttgtcaccgggtcatgggtt
gatcacagcttcgacattggaatgcttgacaatgcaaattcgatattgtataggcctctt
agagatttgaatgggattccagggtccaaagccttagttgtgtgcttgactggctaccaa
ggtcatgatagagaagatattatgagaatggttgagttgatgggtgggcagttctccaag
ccgttggttgctaacagagtgacccatcttatatgctacaagtttgagggagaaaagtat
gagctagccaagcggattaagaggattaaacttgtgaaccaccgttggttagaggactgc
ttaaagaattggaagctcctacctgaggttgattacgagataagtggctatgagttggac
ataatggaggcttcagctagggattctgaggacgaagcagaagatgcctctgtcaagcct
gcaaataccagtcctcttggtcttagggttggtgccgtgcctgcagttgaaatctctaag
ccgggaggaaaagatttccctcttgaggaagggtcatcattatgtaatacgtccaaagat
aattggttaactcctaaaaggacggacagaccttttgaagcaatggtctctactgatcta
ggtgttgctcagcagcataattacgtgtcccccattagggttgcaaacaagactcctgag
caagggatgagcaaaatggagactgatggctcgacgtctattaacaggagtatcagaagg
cattcttctctagccacttattcaaggaaaacacttcagagatcgccagagactgatact
ttgggaaaagagtcaagtggccaaaaccgttccttgagaatggatgacaagggcctaaaa
gcttcgtctgcctttaatacctctgcatcaaaatctggttcttccatggaaagaacgtca
ctctttcgagatcttggcaagattgatatgttgcatggcgaggagttccctccgatgatg
cctcaggcaaaatttacagatggatctgtcagtaggaaagattcactgagagtacaccac
aacagtgaggcaagtattccaccaccgtctagtttgttattgcaggaactaagaccaagt
tcgcctaacgacaaccttaggcctgtgatgagcattagtgacccaactgaaagtgaggaa
gctggccataaatcacccacgagtgagttaaacactaaactgttgagctctaatgtggta
cccatggtcgatgctctttcaactgcggagaatatcatttcaaattgtgcgtgggatgaa
ataccggagaaatcattgactgagagaatgacagaaaatgtcttattgcaggaacaaaga
tcaggctcacctaagcaaaaccttagtgttgtgccaaacctcagggaagctgcacatgag
ttggatctgagtgattcagcagctaggttgttcaattcaggtgttgttcccatggaagct
gatatcagaactccagaaaattctactatgaagggtgcattggatgaagtacctgaaaga
tctgtaactgaccctgtgatgaggagatctagcacctctcctggatcgggtttaatcaga
atgaaagacaagcaagaaacagagctgaccacgaagaaaacagctccaaaaaagagccta
ggcaccagaggcaggaagaagaaccccattaaccaaaagggatcaatatacttgagcgaa
ccttccccaacggacgagcgcaatgtttgtctaaacaaaggaaaagtttcagcgccagta
acaggtaatagcaatcaaaaagagatatcaagccctgtcctaaatactgaggttgtacaa
gacatggcaaaacatattgacacagagactgaagccctccagggaattgactctgtagat
aataaatctttagccccagaagagaaagaccatcttgtgttggatctgatggtgaaccaa
gataagctgcaggctaagaccccagaggcagctgatgcagaggtggaaattacggtgcta
gaacgggagcttaatgatgttccaactgaagatccaagtgatggtgcattacaatccgag
gttgataagaatacaagtaaacgcaaaagggaggctggtgtaggtaaaaatagccttcaa
agagggaagaaaggaagttcttttacagccaaagtaggaaaatccagagtcaagaagacc
aaaatatctagaaaagaaaatgatatcaaagcaaatggtactctgatgaaagatggaggg
gataactctgcggatgggaaggagaacttagcattggaacatgaaaatgggaaggtcagt
tctggtggagaccaaagccttgttgcgggggaaacattaacaagaaaggaagctgccact
aaagatccaagctatgctgcagcgcaattagaggttgatacaaagaaaggtaaacgcaga
aagcaggccactgtagaagaaaataggcttcaaacacctagtgtcaaaaaggcgaaagtt
tctaaaaaagaagatggcgccaaagcaaacaatactgtgaagaaagatatatggattcac
tctgcagaagtgaaggagaatgtagcagtagatgaaaattgtggagatgtcagttctgat
ggagctcaaagcctggttgtggagaaatctttagctaaaaaggaggctgcagctaaggat
ccaagtaatgctgcaatgcaattagagtttgatgataataaatgtaaacacggaaaggag
ggtattgtagaaagaagtagccttcaaagtggaaagaaaggaagttcttctagagttgaa
gtagggaaatcaagtgtcaagaagactaaaaaatctgaaaaaggaagtggcaccgaagca
accgacactgtgatgaaagatgtaggggataattctgcaaaagagaaggagaacattgca
gtggataatgaatctagaaaggtgggatctggtggagaccaaagcccggtagcaagaaag
aaagttgcaaagtcagctaaaacaggtacaaaggcggagaaagagtctaagcagctcagg
gttaatcctttggctagtagaaaagtcttccaggaccaagaacatgagccgaaatttttt
attgtcagtggtcctaggtcccagagaaacgaataccagcagatcattaggcgtttaaaa
ggaaaatgttgccgggattctcatcagtggtcttatcaagcaacacatttcattgctcct
gaaatccgtaggaccgaaaagtttttcgctgctgctgcatctggaagttggattctgaag
actgactatgtggctgattcaaaggaagctgggaaactattacaagaggagccttatgaa
tggcacagttctggtcttagtgctgatggtgcgataaacctcgagtccccaaagaaatgg
cggctcgtcagggagaaaacaggacacggtgctttatatggactgcgcattgttgtatac
ggtgactgcaccatcccttgtttggatacactaaagcgagctgtgaaagctggggatggt
acgatacttgcaacggcgcctccttacacgcgtttcttgaatcaaaacacggatttcgcg
ttgataagccccgggatgccgcgggatgacgtctggatccaagagtttatacgccacgaa
atcccgtgtgtcctctccgattacctggtggagtacgtttgtaaacccggatacgcactt
gacaagcatgtgctctacaacacgaactcatgggcagaaaagtcgtttaacaagatgcag
cttagagcagatttgtgtgtgtaccattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (58)   

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