KEGG   Arabidopsis thaliana (thale cress): AT4G10340
Entry
AT4G10340         CDS       T00041                                 
Symbol
LHCB5
Name
(RefSeq) light harvesting complex of photosystem II 5
  KO
K08916  light-harvesting complex II chlorophyll a/b binding protein 5
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath00196  Photosynthesis - antenna proteins
ath01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:ath00001]
 09100 Metabolism
  09102 Energy metabolism
   00196 Photosynthesis - antenna proteins
    AT4G10340 (LHCB5)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   00194 Photosynthesis proteins [BR:ath00194]
    AT4G10340 (LHCB5)
Photosynthesis proteins [BR:ath00194]
 Antenna proteins
  Light-harvesting chlorophyll-protein complex (LHC) - Plant, Green alga [OT]
   LHCII
    AT4G10340 (LHCB5)
SSDB
Motif
Pfam: Chloroa_b-bind
Other DBs
NCBI-GeneID: 826626
NCBI-ProteinID: NP_192772
TAIR: AT4G10340
UniProt: Q9XF89 A0A178UW55
Structure
Position
4:6408007..6409849
AA seq 280 aa
MASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSETSDELA
KWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARW
AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV
LLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFF
IQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL
NT seq 843 nt   +upstreamnt  +downstreamnt
atggcgtctttgggtgtgtcggaaatgcttggtactccccttaacttcagggcagtttca
agatcgtctgctccgttggcatcaagcccatccacgttcaagactgttgctctcttctct
aagaaaaagccagctcctgctaagtccaaggctgtctctgagactagcgatgagctcgcc
aagtggtatggtcctgacaggagaattttcttgcctgatggtcttttggatagatcagag
atcccagagtacttaaacggtgaagttgctggagattatggttatgacccatttggtctt
ggaaagaagcctgagaactttgctaaataccaagcttttgaattgatccatgcgagatgg
gctatgttaggagcagctggtttcatcattcctgaagctttaaacaaatatggcgctaac
tgtggccctgaagctgtctggtttaagactggtgctttgcttcttgatggaaacacattg
aactactttggcaagaacatccctatcaaccttgttctcgccgtagttgctgaggttgtt
ctcctcggtggagccgagtactacagaatcaccaacggattggatttcgaggacaagcta
cacccaggaggtccatttgatcctctaggccttgctaaggaccctgagcaaggagctctt
ctcaaagtcaaagagatcaagaacgggagattagccatgtttgcgatgctcggtttcttt
atccaagcgtatgttaccggagaaggtcctgttgagaaccttgcaaagcatctcagtgat
ccttttggaaacaacttgcttaccgtcatcgctggaactgccgagagagctcccactctc
taa

  All links  
Gene (11)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

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