KEGG   Arabidopsis thaliana (thale cress): AT5G05450
Entry
AT5G05450         CDS       T00041                                 
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolases superfamily protein
  KO
K14809  ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ath03009]
    AT5G05450
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AT5G05450
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    AT5G05450
SSDB
Motif
Pfam: DEAD Helicase_C CTE_SPB4 ResIII GramPos_pilinD1
Other DBs
NCBI-GeneID: 830428
NCBI-ProteinID: NP_196164
TAIR: AT5G05450
UniProt: Q9FLB0 A0A178UTE0
Position
5:1611737..1615387
AA seq 593 aa
MDSSANINKALTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDA
ATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANV
NSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL
EMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQL
TNSKTPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPAL
KSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPN
MFNHRAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDASDVIPIIRSAA
MKDRAVMEKGLKAFVSFVRAYKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMSEVKQHRL
SSEGFTPVEGVKFEEIKFKDKYREKQRQQNLQVRKEKRQEEKKEKGKRKRVDASASNDPK
KASRKLTGKQRQTIQTAEDEEVMDRDYKLMIKVKKGLIKEDEYERLTGDDDLF
NT seq 1782 nt   +upstreamnt  +downstreamnt
atggattcatcggcgaacataaacaaagctctaacggagacgcgtttctccgacctcgaa
cctccactctccggagatatcattgaggctcttaatcagtctgatttcgagttctgcact
ccggttcaagccgcgacgatccctttactctgtagttacaaggatgttgccgtcgacgct
gccactggttctggaaaaaccctagctttcgtcgttcccctcgtagaaatcctccgtcga
tccacctcattccctccgaagcctcaccaggtcatgggggtgattatatcgccaacgaga
gagctatcaacgcagatatataatgtcgcacaaccatttgtttcgactttggcaaatgtg
aactctgtgttgcttgttggaggccgagaggtgaaagctgacatgaagattattgaagaa
gaaggatgcaatgtcttgattggtacacctggaagactttctgatattatggaacgaatg
gagattctggattttcgaaatcttgagattcttattctagatgaggcagataggcttttg
gagatggggttccaaaggcaggtgaattacattatctcacgcttgccaaagcagaggagg
actggcctcttttcagctacacaaacagagggcgttgaagagctcgccaaggctgggctt
aggaaccctgtgagagttgaagttcgagctaagtcgaagtcggaatcatcccagcaattg
acaaactcgaaaaccccttctggtcttcatcttgagtatatggaatgcgaagcagataaa
aaatcatcacaactagttgatctcctcatcaagaacagtgataaaaagcttatagtattc
ttcatgacctgtgcttctgttgactactggggactcgtactttcaaaaattcctgccctg
aagtccatatctttaattcctatccatggggatatgaagcagaatgcaagagacaaggca
ttagcttcgtttactaaagcatcaagtggtgcccttctgtgcacagacgttgctgcacgt
ggacttgatattccaggcattgattatgttgttcagtatgatcccccacaagacccaaat
atgttcaaccacagggccggcagaactgcaagattaggaagacaagggagggccattgtg
tttttactgcccaaggaagaagcctatgtagagtttatgcgcataagaagagtccctttg
gaagagagaaaatgctctgaggacgcatccgatgtcatcccgattatacgttcagctgcc
atgaaggaccgagcagtgatggagaagggattaaaggcatttgtttcctttgtccgtgct
tataaggagcatcactgctctttcattttcagatggaaagaccttgagattggaaagtta
gccatgggatatggcctcttgtatcttccttcaatgtctgaagttaaacaacacagactt
tccagtgagggtttcacaccagttgaaggtgtcaagtttgaagaaataaaattcaaggac
aaatatcgggagaaacaaagacagcaaaacttacaagtaaggaaagagaaacggcaagaa
gagaaaaaagagaaaggcaagagaaaaagggttgatgcttctgctagtaatgatcctaag
aaagcgtcgagaaagttaacggggaaacaaagacaaactattcaaactgctgaagatgaa
gaagtgatggatcgagattataagttgatgataaaagtaaagaaagggttaattaaagaa
gatgaatatgaaagacttacaggagatgatgatttattctga

  All links  
Gene (21)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

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