KEGG   Arabidopsis thaliana (thale cress): AT5G12190
Entry
AT5G12190         CDS       T00041                                 
Name
(RefSeq) RNA-binding (RRM/RBD/RNP motifs) family protein
  KO
K12833  pre-mRNA branch site protein p14
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G12190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G12190
Spliceosome [BR:ath03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    AT5G12190
 Complex B
    AT5G12190
 Complex C
   U2 SnRNP specific factors
    AT5G12190
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_7 RRM_8
Other DBs
NCBI-GeneID: 831092
NCBI-ProteinID: NP_196780
TAIR: AT5G12190
UniProt: Q9FMP4 A0A178UGK3
Position
5:complement(3940481..3941436)
AA seq 124 aa
MTTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTA
FVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVS
TKDK
NT seq 375 nt   +upstreamnt  +downstreamnt
atgacaacaatcagtcttcgcaagagtaacaccagactcccaccggaggtgaatcgcgtg
ctctacgttcgtaaccttccctttaacataacgagcgaagagatgtacgatatcttcggc
aagtacggcgcaattcgccagattcgaatcggttgcgacaaggcgacgaaaggtactgcc
ttcgtcgtttacgaggatatctacgatgccaagaacgccgtcgaccatctctctggcttc
aacgtcgcgaatcggtacctaatcgtgttatactaccagcacgcgaagatgagcaagaag
tttgaccagaagaagagtgaagatgagatcaccaagttgcaggagaagtatggagtctct
accaaagataagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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