KEGG   Arabidopsis thaliana (thale cress): AT5G14050
Entry
AT5G14050         CDS       T00041                                 
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
  KO
K14553  U3 small nucleolar RNA-associated protein 18
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    AT5G14050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ath03009]
    AT5G14050
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    AT5G14050
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_EML_2 WD40 WD40_WDHD1_1st WDR55 WD40_CDC20-Fz ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st EIF3I Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_EIPR1 NBCH_WD40 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_VPS8 WD40_MABP1-WDR62_1st Cytochrom_D1 Hira
Other DBs
NCBI-GeneID: 831254
NCBI-ProteinID: NP_196909
TAIR: AT5G14050
UniProt: Q9FMU5 A0A178U936
Position
5:4533131..4535327
AA seq 546 aa
MSLSQNAPKSKGIKREELKKQYEDVEDEEEIGSDDDLTRGKRRKTEKEKQKLEESELVEM
KKLENLIFGSLYSPVTFGKEEEEDGSALFHVDRSAVRQIPDYEDDGDDDEELSDEENGQV
VAIRKGEAAWEDEEEKQINVDIASVNRLRKLRKEENEGLISGSEYIARLRAHHAKLNPGT
DWARPDSQIVDGESSDDDDTQDGGVDDILRTNEDLVVKSRGNKLCAGRLEYSKLVDANAA
DPSNGPINSVHFHQNAQLLLTAGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKAAFLPNG
SQVIVSGRRKFFYSFDLEKAKFDKIGPLVGREEKSLEYFEVSQDSNTIAFVGNEGYILLV
STKTKELIGTLKMNGSVRSLAFSEDGKHLLSSGGDGQVYVWDLRTMKCLYKGVDEGSTCG
TSLCSSLNGALFASGTDRGIVNIYKKSEFVGGKRKPIKTVDNLTSKIDFMKFNHDAQILA
IVSTMNKNSVKLVHVPSLTVFSNWPPPNSTMHYPRCLDFSPGSGFMAMGNAAGKVLLYKL
HHYQNA
NT seq 1641 nt   +upstreamnt  +downstreamnt
atgagcttatctcagaatgctccgaaaagtaagggtattaaaagagaggagctcaagaaa
cagtacgaagatgttgaagatgaggaagagattgggtccgatgatgatctcactagggga
aagagaagaaagacagagaaggagaagcagaagctagaagaatcggaactggttgaaatg
aaaaagcttgagaatttgatattcgggtcactctactctcctgttacgtttggtaaggaa
gaagaagaagatggttcggctttgtttcatgtagaccgttctgctgtgaggcagattcct
gactacgaggatgatggtgatgatgatgaagagctttctgatgaagagaatggtcaagtt
gtggcaattagaaagggagaagctgcctgggaggatgaagaagagaaacagataaacgtt
gatatagctagtgtcaaccgtctaaggaagctaaggaaagaggagaatgagggtttgatc
tctgggtctgagtacattgcaaggctgagggctcatcatgctaagctaaacccggggact
gattgggctcggccagattctcaaatagttgatggagagtcttcagatgatgatgatact
caggatggaggagttgatgatatccttcgaacgaatgaagatcttgtggtgaagtctcgt
ggtaacaagctgtgtgctggtcgtcttgaatactctaagcttgtggatgccaatgcagcg
gatccttcaaatggtccaataaactctgtccacttccatcagaacgctcagctgcttctc
actgctggattggatcgacggttaaggtttttccagattgatggaaagaggaacaccaag
atccagagcatttttcttgaggactgtcccattcgtaaagcggctttcttgcccaatggc
tctcaggtcattgtctccggaagaagaaagttcttttacagctttgatttggagaaggca
aagtttgacaaaattggccctttggttggtagagaggagaaaagcttggaatatttcgag
gtgtcacaagactctaacaccatagcttttgttggcaacgaaggttatatcttacttgtg
tctacaaaaacaaaagagctgataggaaccctaaagatgaatggttcagttaggtcttta
gcatttagtgaagatgggaagcatttgctgagctcaggaggtgacgggcaagtctatgtc
tgggatctgagaacaatgaaatgcttatacaaaggcgtggatgaaggcagcacttgtggc
acttctctttgcagttcgcttaacggagcattgtttgcttctggaaccgacagaggaatc
gtaaacatttacaagaaatctgagtttgtgggaggcaaaagaaagccgataaagacagtg
gacaatctcacatccaagatagatttcatgaagttcaaccatgatgctcagattctagct
atagtctctacaatgaacaaaaacagtgtaaagctagtccatgttccatccctaaccgtc
ttctcaaactggccgccaccaaacagcacaatgcattaccctcgctgcctagacttcagc
cccggaagtggcttcatggctatggggaacgctgccggaaaagttttgctgtataaactc
catcattaccagaatgcttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (25)   
   Pfam (25)   
All databases (53)   

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