KEGG   Arabidopsis thaliana (thale cress): AT5G38470
Entry
AT5G38470         CDS       T00041                                 
Symbol
RAD23D
Name
(RefSeq) Rad23 UV excision repair protein family
  KO
K10839  UV excision repair protein RAD23
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03420  Nucleotide excision repair
ath04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    AT5G38470 (RAD23D)
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT5G38470 (RAD23D)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:ath03051]
    AT5G38470 (RAD23D)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT5G38470 (RAD23D)
Proteasome [BR:ath03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    AT5G38470 (RAD23D)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      AT5G38470 (RAD23D)
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD UBA_7 UBA_RAD5A Dsc3_N UBA_3 CUE TECR_N Ubiquitin_5
Other DBs
NCBI-GeneID: 833835
NCBI-ProteinID: NP_198663
TAIR: AT5G38470
UniProt: Q84L30 A0A5S9Y9M4
Position
5:15404622..15407745
AA seq 378 aa
MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE
NNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTAT
AAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPE
RAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQG
MPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQAD
FLRLINEPVEGEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKN
EELAANYLLDHMHEFEDQ
NT seq 1137 nt   +upstreamnt  +downstreamnt
atgaagattttcgtgaagactctcagtggttcgaacttcgagatcgaagtaaaacctgca
gataaggtttctgatgttaaaacggctatagaaactgttaaaggtgcagaataccctgct
gctaagcagatgctgatccaccaaggaaaggttctaaaggatgagaccacattggaagag
aacaatgttgttgagaacagtttcattgttatcatgttgtccaagaccaaggcttctcca
agtggggcatcaaccgcatctgcaccagcacctagtgctacacagccacagacagtagct
acacctcaggtttctgctcctactgcctcagttccagttcctacaagtggaactgcaacc
gctgcagctccagctactgctgcttcggttcagacagatgtgtatggtcaagcagcatca
aaccttgttgctggaactactttagagtccactgttcagcaaattcttgatatgggtgga
ggtagttgggaccgtgacactgttgttcgtgctctgagagctgcgttcaacaatcctgaa
agagctgttgaatacctgtactcgggtatccctgctcaagctgaaatcccaccagttgct
caagccccagctactggggaacaggcagccaatcctctagcacagccccaacaagcagca
gctccagcagctgcaactggtggtccaaacgcaaatccattaaacctgttcccccagggc
atgcccgctgcagatgctggtgctggagctggtaatcttgatttcctgcgtaacagtcaa
cagttccaagccttgcgagctatggtacaagcaaacccacaaattctacagcctatgctt
caggagctcggtaaacaaaacccccagcttgtgcgactaattcaagagcaccaggctgac
ttcctacgcttgataaacgaacctgtcgagggagaagagaatgttatggaacagttggaa
gcagcaatgccacaagctgttaccgttacacctgaagagcgtgaagccattgaacggctt
gaagggatggggtttgatcgtgcgatggtcttggaagtgttctttgcgtgtaacaagaat
gaagaacttgcagctaattaccttctagatcacatgcatgagtttgaagatcaataa

  All links  
Gene (19)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (11)   
   Pfam (11)   
All databases (37)   

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