KEGG   Arabidopsis thaliana (thale cress): AT5G43920
Entry
AT5G43920         CDS       T00041                                 
Name
(RefSeq) transducin family protein / WD-40 repeat family protein
  KO
K22382  WD repeat-containing protein 26
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ath04121]
    AT5G43920
Ubiquitin system [BR:ath04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     AT5G43920
   CTLH complex
    AT5G43920
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 TAF1C_beta-prop Gmad1 PROPPIN
Other DBs
NCBI-GeneID: 834414
NCBI-ProteinID: NP_199205
TAIR: AT5G43920
UniProt: Q9FND4
Position
5:17672628..17676023
AA seq 523 aa
MENGLWEVLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQV
LSGNWDSCVQVLDRIFDNSMDDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLR
MGKEKIHRLACDIVYSKEMESGEVDNCLVLDLRRKLLVELEKLIPLPIVIPERRLEHLVE
TAVMDQIDTCMYHNSCDAVSLYKDHCCGRDQIPSETVQILVAHKNEVWFVQFSNSGKYLA
TASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGNAEVLKLWDVDT
GVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGIVMWDTDGNEIKAWRGTRIPKV
VDLAVTPDGESMITVFSDKEIRILNLETKVERVISEEQPITSLSISGDGKFFIVNLSCQE
IHLWDLAGEWKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEV
LSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGPGKPNKPLN
NT seq 1572 nt   +upstreamnt  +downstreamnt
atggagaatgggttatgggaggttttaggttcaaaagggttgttgaagaaacatgaattc
attaggattttggttcaatgcttatactcgttaggattcaagaactctgcttcttgtctg
gaattcgagtcaaagatcttgtataaaacagctgattctgagtttcttgaaaagcaagtt
ttgagtgggaactgggatagttgcgtacaggttctagacagaatttttgataattccatg
gatgatacgaggaacacggctttatatctagtgttcaagcaatgtttgttggagtatttg
aaacgtggggatgtttctttggccttgaatgtgttacggaagcaagctccgttgttacgg
atgggaaaagagaagattcataggcttgcttgtgatattgtttattcgaaagagatggaa
tccggtgaagtagacaactgtttagttctagatttgaggagaaagttgttggttgaactg
gagaagttgattcccttgccaattgttattcctgagagaaggttggaacatttggttgag
actgctgtgatggaccagattgatacgtgtatgtatcataactcatgtgatgcagtatcg
ctttacaaggatcactgttgcggtagagaccaaattccttcagagacagtccagattttg
gtggcacacaaaaatgaagtgtggtttgtgcaattctctaatagtggcaaatatctggcc
actgcatcaagcgattgtacagctataatatggaaggtactggatgacaacaaagtcgaa
ctgaagcacacacttgagagccaccaaaatccagtttcttttgtctcgtggagtcctgac
gatactaaactgcttacatgcggaaacgctgaggttcttaagctatgggatgttgacaca
ggtgtgttgagacacacatttggaaacaacaatactggattcactgtcagctcttgcgca
tggttccctgactcaactcggcttgtctgtggcagttctgacccagaaagagggattgta
atgtgggacactgatggaaacgagatcaaagcctggagaggaacgagaattccaaaggtg
gtggatttggctgtgacgccggatggcgagagtatgattacagtgttttcggataaagag
atccggatcttgaatttggagacaaaagtcgaacgtgttatctctgaggaacagccaatt
acttccctttcaatttctggtgatggtaagttttttatagtcaacttgagctgccaagag
atacatctttgggatcttgctggagagtggaaacaaccattgaagttctcgggtcacagg
cagagcaaatacgtgatacggtcatgttttggtgggttggatagttcgttcatcgccagt
ggaagtgaggattcacaggtttacatatggaatctaaagaacacaaagccgcttgaagtg
ttatcaggtcattcgatgaccgtaaactgtgtaagctggaacccgaaaaatcctcggatg
ctagcctctgctagtgatgaccaaaccatccgtatttggggaccgggcaaaccgaacaaa
ccactgaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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