KEGG   Arabidopsis thaliana (thale cress): AT5G53360
Entry
AT5G53360         CDS       T00041                                 
Name
(RefSeq) TRAF-like superfamily protein
  KO
K04506  E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    AT5G53360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ath04121]
    AT5G53360
Enzymes [BR:ath01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     AT5G53360
Ubiquitin system [BR:ath04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   SINA (Seven in absentia) proteins
    AT5G53360
SSDB
Motif
Pfam: Sina_TRAF Sina_ZnF FAIM1
Other DBs
NCBI-GeneID: 835417
NCBI-ProteinID: NP_001330825
TAIR: AT5G53360
UniProt: Q8S3N1 A0A654GAH8
Position
5:21647821..21649567
AA seq 233 aa
MDILYVQPVNQECIIALEKVAESLELPCKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPY
AGSECAAVGDITFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQY
FCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRK
VRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDSGVCITSMCSS
NT seq 702 nt   +upstreamnt  +downstreamnt
atggacatactttatgttcaacctgtaaatcaagagtgcataatcgctcttgagaaagta
gctgagtcgcttgagttaccgtgcaagtattacaatcttggatgccttgggattttccct
tattacagtaaactaaagcatgagtctcaatgtaactttagaccttatagttgtccatat
gctggctcggagtgtgctgctgtaggtgacattactttccttgttgctcatttaagagat
gatcataaagtcgatatgcatactggatgtacgtttaatcatcgttatgttaaatctaat
ccacgcgaagtagagaacgctacttggatgctaacggtgtttcaatgttttggtcaatac
ttttgtcttcattttgaagcgtttcagctcggtatggctccagtttacatggcgtttctg
agattcatgggcgatgaagatgacgcacgaaactatacatacagtttagaagttggaggc
agtgggagaaaacagacatgggaagggacaccaagaagtgtcagagatagtcacaggaaa
gtcagagacagtcatgacggtcttataatccaaagaaacatggcactcttcttttccggt
ggagacaagaaagaactgaaacttagagtcactggaagaatctggaaagagcaacagaat
ccagattctggtgtttgcataacctctatgtgtagtagctga

  All links  
Gene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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