KEGG   Arabidopsis thaliana (thale cress): AT5G54640
Entry
AT5G54640         CDS       T00041                                 
Symbol
RAT5
Name
(RefSeq) Histone superfamily protein
  KO
K11251  histone H2A
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    AT5G54640 (RAT5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ath03036]
    AT5G54640 (RAT5)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ath04147]
    AT5G54640 (RAT5)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histones
    AT5G54640 (RAT5)
Exosome [BR:ath04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   AT5G54640 (RAT5)
SSDB
Motif
Pfam: Histone_H2A_C Histone CBFD_NFYB_HMF
Other DBs
NCBI-GeneID: 835553
NCBI-ProteinID: NP_200275
TAIR: AT5G54640
UniProt: Q9LD28 A0A178UIB7
Structure
Position
5:22196287..22197492
AA seq 130 aa
MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
KAGASKPQED
NT seq 393 nt   +upstreamnt  +downstreamnt
atggctggtcgtggaaaaactcttggatccggtggggcgaagaaagctacatctcggagt
agcaaagccggtcttcaattcccggtgggtcgtatcgctcgtttcttaaaagccggtaaa
tacgccgaacgtgttggtgccggtgctccggtttatctcgccgccgttctcgaatatttg
gccgccgaggttcttgaattagctggaaacgcagcaagagacaacaagaagacacgtatt
gttcctcgtcacattcagcttgcggtcagaaacgatgaggagctaagcaagcttcttgga
gatgtgacgattgctaatggaggagtgatgcctaacatccacaatctccttctccctaag
aaggctggtgcttcaaagcctcaggaagattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (5)   
   PDB (5)   
Protein domain (3)   
   Pfam (3)   
All databases (34)   

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