KEGG   Amborella trichopoda: 18421517
Entry
18421517          CDS       T02990                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
atr  Amborella trichopoda
Pathway
atr03030  DNA replication
atr03410  Base excision repair
atr03420  Nucleotide excision repair
atr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18421517
   03410 Base excision repair
    18421517
   03420 Nucleotide excision repair
    18421517
   03430 Mismatch repair
    18421517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atr03032]
    18421517
   03036 Chromosome and associated proteins [BR:atr03036]
    18421517
   03400 DNA repair and recombination proteins [BR:atr03400]
    18421517
DNA replication proteins [BR:atr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    18421517
  DNA Replication Termination Factors
   ELG1-RFC complex
    18421517
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    18421517
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     18421517
  Check point factors
   HRAD17(Rad24)-RFC complex
    18421517
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA Rad17 Sigma54_activ_2 RuvB_N DUF815 ABC_tran AAA_5 AAA_22 RsgA_GTPase Bac_DnaA Mg_chelatase DNA_pol3_delta AAA_29 AAA_2 T2SSE AAA_16 AAA_23 nSTAND3 nSTAND1 DUF6165 TsaE AAA_30
Other DBs
NCBI-GeneID: 18421517
NCBI-ProteinID: XP_011623926
Position
Unknown
AA seq 354 aa
MLWVDKYRPKTLDQIAVHDDIAENLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLREMFG
SAAEKVKIENKTWKIETGTRKIELELTTLSSTHHVELNPSDAGFQDRYIVQEIIKEMAKS
RPIDVNGNKSYKVLVLNEVDKLSKEAQHSLRRTMEKYSASCRLILCCNSASRVIEAVRSR
CLNIRINAPTNEQIVGVLRHIAKKEHLELPIGLATRIAVQSNRNLRRAILSFEACRVQQY
PFTENQVVQTMDWEQYVAEIVSDIVNEQSPKRLYSVRLKIYELLVNCIPPEVILKKLVSE
LMKKLDSELKHEVSHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKKFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggttgataagtacaggccaaaaaccctagaccagattgctgtccatgacgac
atcgccgaaaacctaaagaaacttgtttccgagcatgattgtcctcatctcctgttttat
ggtccatctggctctggaaagaaaaccctcatcatggctcttctcagggaaatgtttgga
tctgcagctgagaaggtgaaaattgagaacaaaacatggaagatagagactggaactaga
aagatcgagcttgaattgaccacattatcaagcactcaccatgttgagctgaatcctagt
gatgccggctttcaggataggtatattgttcaggagattatcaaagagatggccaagagt
aggcctattgatgtgaatggaaacaaaagttacaaagttctagtgctcaatgaggttgac
aagctttctaaagaagcacaacattctcttcgaaggacaatggagaaatacagtgcatca
tgccgactgatattgtgttgcaacagtgcatcgagagtaattgaagcagttcgttcgcgg
tgtttgaatattagaattaatgcaccaactaatgaacagattgttggtgtattgaggcac
atagctaagaaggaacaccttgaacttcccattggattggcaactcgtatagcagttcag
tcaaacaggaatttaagaagggcaatactctctttcgaagcttgccgggtgcaacagtat
ccttttactgagaatcaggttgttcaaactatggattgggagcaatacgttgctgagata
gtatcagatatagtgaatgagcaaagccctaaaagactgtattcagttaggttgaaaatt
tatgagctgctagtaaattgtattccaccggaagtcattctgaagaaattggtgtcagaa
ttgatgaagaagttggattcagaattgaagcacgaagtttcccattgggctgcatactat
gaacacaggatgcgtcttgggcaaaaatccatctttcatattgaagcatttgtggcaaag
tttatgagcatctacaagaaattcctcattgccacctttggttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (66)   
   KEGG ORTHOLOGY (1)   
   RefGene (62)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (100)   

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