KEGG   Amborella trichopoda: 18447625
Entry
18447625          CDS       T02990                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
atr  Amborella trichopoda
Pathway
atr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18447625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atr03019]
    18447625
Enzymes [BR:atr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     18447625
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     18447625
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 18447625
NCBI-ProteinID: XP_006857781
UniProt: U5DFP6
Position
Unknown
AA seq 716 aa
MANPCKSRVFAPLFGSFPSRNFFSHYFSTISIKKVTRNNFTSSFEELRHHVREADFVALD
LEMSGITSAPWRESFEFDHSTIRYLKIKDSAEKFAVVQFGVCPFRYDNSTKTLIAYPHSF
YIFPRKELPIDFPSCEFLCQTTSIEFLARHQFDFNACIHEGISYLSRAQEAEALHQLGLA
DVDHLPYSECNPKETREMPLVSFGDILFTERMKIKLSEWRDSLLRNQNCDYHFEENSSNC
KLQFRTDFFKMRPSLLLSGFSSHQLRLIQQVIRKHFDDLAFIRINDENSLSQNRIVYTDW
KDDRAKLMEEVRKDMQKVTKSKVDAAVGFRHVIDLLSSEGKVIVGHNCLLDIAHVHSKFL
GPLPSTLAEFASSIHKLLPYIIDTKRLLISELAIQRLMKKTGTSLSSAFSFLCSQMVSSS
DTSSSNSRPFFKVEVLTDEESSSNQSNPGAKHEAGYDAFMTGCVFAQICHLLGIDFSIYK
GSDVVEHEKLQKHLNLLYLGWNSGTMVDMKTGQEIAHSTVTNLKKRYPKIQFSNIVLVWG
FQKKFKPWEMKDIVTKVLGISSVTSVFYLDETAAFVQFSKEQYVQDFLVLKDTVERESGP
LSVLHPLGKLLEGGNTRAAKYDIYKEICSSPLSRVLFADQTEAMGIKWKTKVEIQKLEQA
DVGEGGSDRKNEVVAEKKILRDGKPHMEGSEDCLSSESILDVLYSSGSLIFKKVRT
NT seq 2151 nt   +upstreamnt  +downstreamnt
atggcgaacccatgtaaaagtagggttttcgctcccctctttggtagcttcccctcaaga
aacttcttctctcactacttttccactatctctatcaagaaagtcacaagaaacaacttt
acttcttctttcgaagagcttcgccaccatgtcagagaagctgattttgtagccttggat
ttggagatgagtggtattaccagtgctccatggagagagtcctttgagtttgatcattcg
accattaggtatttgaagatcaaagattcggccgagaaatttgccgttgttcagtttggg
gtttgcccttttcgctatgataattcaacaaaaaccctaattgcttatccgcacagtttc
tatatatttccccgtaaagagcttccgatcgattttccctcctgtgaatttctctgccaa
acaacttcaattgagtttttggccagacaccaatttgatttcaatgcttgcatacatgaa
ggaatatcttatttgtccagagcacaagaagctgaagcactgcatcagttaggtctagca
gatgtcgaccatttaccctattctgaatgtaatccaaaggaaactagagaaatgcccctg
gtgagttttggtgacattctttttaccgagaggatgaagattaaacttagtgaatggcgt
gacagtttgttgaggaaccaaaactgtgactaccactttgaggaaaactcttcgaactgc
aagctacaattccggactgatttcttcaaaatgcgtccttcccttcttctgagtggtttc
agctcacaccaacttagattgattcagcaggtcataagaaagcatttcgatgatcttgca
tttatcaggataaatgatgaaaattctctcagccagaatcggattgtgtatacagactgg
aaggatgatagggctaagctcatggaagaggtgaggaaagatatgcaaaaggtgaccaaa
tcaaaggttgatgctgcagtggggttccggcatgttattgaccttctatcttcagaagga
aaagtgattgtggggcacaactgtttgttagatattgcacacgtacacagcaaattcctt
gggcctcttccttcaaccctagcagagttcgcatcttcaattcacaaactcttgccatat
atcatcgataccaagcggcttttgatatctgagctcgcgatccaacggttgatgaagaag
accggcacatctttgtcttcggctttttccttcttgtgttcacaaatggtttcttcttct
gatacctcctcttcaaattctcgcccattttttaaagttgaagtcttaactgatgaagaa
agctcatccaatcaatcgaaccctggtgcgaagcatgaggcaggatacgatgccttcatg
actggctgcgtattcgctcaaatctgccatcttctaggcattgatttctctatctacaag
ggaagtgacgtggtagagcacgagaagttgcaaaaacacctgaaccttctctacttaggt
tggaacagtggaactatggtggacatgaaaactgggcaagagattgcccattcgacagtc
acaaaccttaaaaagcgataccccaaaattcaattctcaaacattgttctggtttggggt
tttcaaaagaaattcaagccatgggagatgaaagatatcgtaactaaggtcttgggtata
tcttctgttacttctgtattttacttggatgaaacagctgcgtttgtacagtttagtaaa
gagcaatatgtccaagattttcttgtattgaaggacactgtagagagagaaagtggccct
ttatcagttctccaccccttggggaaattattggaaggagggaacactcgggccgctaag
tatgacatttataaggagatttgcagttctcctctctccagagttttgtttgccgaccag
acggaagccatggggattaaatggaaaacaaaggttgagatacaaaaactagagcaggct
gatgttggtgaaggaggtagtgataggaagaatgaggttgtagctgaaaagaagattttg
agagacgggaaaccacatatggaaggttcagaagactgtttgtcaagtgaaagcatcttg
gatgttttgtatagtagcgggtctcttatttttaagaaggtgagaacttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (38)   

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