KEGG   Agrobacterium fabrum: Atu1497
Entry
Atu1497           CDS       T00070                                 
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
atu  Agrobacterium fabrum
Pathway
atu03030  DNA replication
atu03430  Mismatch repair
atu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:atu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Atu1497 (holB)
   03430 Mismatch repair
    Atu1497 (holB)
   03440 Homologous recombination
    Atu1497 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atu03032]
    Atu1497 (holB)
   03400 DNA repair and recombination proteins [BR:atu03400]
    Atu1497 (holB)
Enzymes [BR:atu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Atu1497 (holB)
DNA replication proteins [BR:atu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Atu1497 (holB)
DNA repair and recombination proteins [BR:atu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Atu1497 (holB)
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA AAA_16 AAA_22 nSTAND3 Mg_chelatase RuvB_N AAA_5 AAA_14 RNA_helicase
Other DBs
NCBI-ProteinID: AAK87288
UniProt: Q7CZ44
Position
circular:complement(1486870..1487895)
AA seq 341 aa
MSEVQGVLDGAIAPQQNTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPEGIGKATLAFRF
ANHVLTHPDPASAPDFLADPDPQSLVSRQITAGASHNLLHLTRPVDEKTGRVKSAITVDE
VRRAGHFFSQTSGTGNWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLL
PTIRSRCMPLRLLPLSDAAMVQALDQLDISPEGEKRDALLTASKGSVAQALKLMNYGGSD
IVEAFAEVMSAEGPGARKRMHKLAEVLAQKDGDIVLGFFMEHVTEELMERARAAAMAGDI
AAAEKHARLSSTLSERITVAQAYNLDKKQMVLSILEDIRSV
NT seq 1026 nt   +upstreamnt  +downstreamnt
atgagtgaggttcagggcgttctcgacggcgcgattgcgccgcagcagaacacgaggctt
ttcgggcatgaagaggcggaggcgttccttgcgcaatcctatcgctcgggcaaaggccat
cacgccatcctgatcgaaggaccggagggcatcggcaaggcgacgctcgccttccgtttc
gccaatcatgtgctgacccatcccgatcccgcatccgcaccggatttccttgctgacccc
gatccgcaatcgctcgtcagccggcagatcactgccggtgcttcccataatctgctgcat
ctgacgcgtccggtggatgagaagaccggccgcgtcaaatccgcgatcaccgtggatgag
gtgcggcgggcagggcatttcttttcccagacctcgggcaccggcaactggcgtatcgtc
atcatcgacccggccgacgatctcaaccgcaatgccgcgaatgccatcctgaagattctg
gaggagccgccgaaacgggcgatgttcctcgtgctttcgcatgcaccgggaaaattgctg
ccgactatccgctcgcgctgcatgccgctacggctcctgccgctttccgatgcggccatg
gtccaagcgctcgatcaactcgacatcagtcctgaaggcgaaaagcgcgacgccctgctt
acggcgtccaaaggcagtgtcgcgcaggcgttgaagctgatgaattacggcggttccgac
attgtcgaggcctttgccgaagtcatgtccgccgaagggccgggggcacgcaagcgcatg
cacaagcttgccgaggttctggcgcagaaggacggcgacatcgttctcggattcttcatg
gaacatgtgacggaagaattgatggagcgggcccgggctgcggcaatggcgggcgatatc
gcggcggcggaaaaacatgcgcggctttcctcgacgctttcggaacgcatcaccgtggcg
caggcctataatctcgacaagaagcagatggtgctttccattctggaagatatccgttcg
gtttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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