KEGG   Agrobacterium fabrum: Atu6182
Entry
Atu6182           CDS       T00070                                 
Symbol
virD2
Name
(GenBank) endonuclease
  KO
K18434  type IV secretion system T-DNA border endonuclease VirD2
Organism
atu  Agrobacterium fabrum
Brite
KEGG Orthology (KO) [BR:atu00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:atu02044]
    Atu6182 (virD2)
Secretion system [BR:atu02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   Atu6182 (virD2)
SSDB
Motif
Pfam: Relaxase
Other DBs
NCBI-ProteinID: AAK90944
UniProt: P18592
Structure
Position
Ti:196503..197846
AA seq 447 aa
MPDRAQVIIRIVPGGGTKTLQQIINQLEYLSRKGRLELQRSARHLDIPLPPDQIHELARS
WVQETGTYDESQPDEERQQELTTHIIVSFPAGTSQVAAYAASREWAAEMFGSGAGGGRYN
YLTAFHIDRDHPHLHVVVNRRELLGHGWLKISRRHPQLNYDALRIKMAEISLRHGIALDA
SRRAERGITERPITYAQYRRLEREQARQIRFEDADLEQSSPQGDHPEFSQPFDTSPFEAS
AGGPEDMPRPNNRQNESQVHLQEPAGVSNEAGVLVRVALETERLAQPFVSETILADDIGS
GSSRVAEGRVESANRTPDIPRAATEAATHTTHDRQRRAKRPHDDDGGPSGAKRVTLEGIA
VGPQANAGEQDGSSGPLVRQAGTSRPSPPTATTRASTATDSLSATAHLQQRRGVLSKRPR
EDDDGEPSERKRERDERSKDGRGGNRR
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgcccgatcgagctcaagttatcattcgcattgtgccgggaggtggcaccaagaccctt
caacaaattatcaatcagttggagtatctatcccggaagggcaggctggagctgcagcgt
tcagcccgacatctcgatattcccctgccaccggatcaaatccacgaacttgcccgaagc
tgggttcaagagactggaacttatgacgaaagtcagccagacgaggaaaggcaacaggag
ttgaccacccatattattgtaagcttccccgccggtacaagccaggtagcggcttatgcg
gcgagccgggagtgggcagccgagatgtttgggtcaggcgcaggggggggccgatacaac
tatcttacggccttccacatcgatcgcgaccacccacatctgcatgtcgtcgtcaatcgg
cgcgaacttttaggacacggctggctgaagatatctcggcgccatccccaactgaattac
gacgccctgcgcataaagatggccgagatttcacttcgtcatggcattgccctcgatgcg
agccgacgagcagaacgtggcatcaccgagcggccgatcacttatgcccaatatcggcgc
cttgagcgggagcaggctcgccaaatccgtttcgaagacgcggatttggaacagtcgtcg
ccgcaaggagatcatccagaattcagccaacctttcgatacatccccatttgaagcatcc
gcgggcggaccggaggacatgcctcggcccaacaatcggcagaatgagtcgcaagttcat
ctccaggagccagctggtgtcagcaacgaagccggtgtccttgtgcgggttgcattggag
acggagcgccttgctcaaccattcgtttccgaaaccattctcgcggacgacatagggagc
ggctcttcgcgtgttgccgagggccgtgtggagagcgcaaaccgcactcccgatattcct
cgcgcagcaactgaagctgccacgcacacgacacacgaccggcagcggcgtgcaaagcgt
cctcatgatgacgacggagggccgagtggagcaaaacgtgtgacattggaaggcatcgcg
gttgggccccaggcgaacgccggcgaacaggatggcagtagtggccccttagtacggcaa
gctggaacgtctcggccatctccaccgacggccacgacgcgggccagcaccgcaaccgat
tcattgtctgctacagcccacctccagcaacggagaggtgtcctttcaaagcgtccgcgt
gaagatgatgatggagaaccgagtgaacgcaaacgcgagagagatgagcgcagcaaggac
gggcgtgggggaaataggagatag

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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