KEGG   Aurantimicrobium photophilum: AURMO_00166
Entry
AURMO_00166       CDS       T05480                                 
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
aum  Aurantimicrobium photophilum
Pathway
aum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AURMO_00166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aum03019]
    AURMO_00166
   03009 Ribosome biogenesis [BR:aum03009]
    AURMO_00166
Enzymes [BR:aum01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AURMO_00166
Messenger RNA biogenesis [BR:aum03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AURMO_00166
Ribosome biogenesis [BR:aum03009]
 Prokaryotic type
  rRNA helicases
   AURMO_00166
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UvrA_inter HEM4 adh_short AAA_19 AAA_22
Other DBs
NCBI-ProteinID: AWR20785
UniProt: A0A2Z3RV43
Position
155124..157025
AA seq 633 aa
MTSSETSDKTEEATAPATIPFSELGLSDAVLKSLKDVGYEIPSAIQAATIPILLEGKDVV
GLAQTGTGKTAAFALPILSRLDLSQKSPQALVLAPTRELALQVCEAFEKYASHMKGVHVL
PVYGGQGYGTQLSALRRGVHIVVGTPGRIMDHLQKGTLDLTALKYLVLDEADEMLKMGFA
EDVETILADTPSDKQVALFSATMPAQIRRISKQYLNDPEEITIKNKTTTSSTITQRYLMV
SYPQKVDALTRILEVENFEGMIIFTRTKNETETLAEKLRARGYSAMAINGDVPQATRERT
VEQLKSGKLDILVATDVAARGLDVERISHVVNFDIPIDTESYVHRIGRTGRAGRSGAAIS
FVTPRESRLLNAIERATRQPLTQMQLPSVEDVNVTRLARFDDAITEALAQPNLILQFREI
VGHYIEHHDVPEADVAAALAVVAQGDTPLLLSAEDERAQRYAREEQTRKERAERGDRGDR
GGRNDRGGRNDRGDRGDRGDRGGRPSRDDRYSRDDRPPRERFNREDRPERRPRESNQPMS
SYRIEVGKRHKVEPRQIVGALANEGGLSRDDFGAIKILPDHSIVELPANLGNDVFGRLEG
TRISGKLIELRADSSSSARRDDRDERPARKPRH
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgacgtcatccgaaacatccgataagaccgaggaagcaactgctcccgcaaccatcccg
ttcagcgaactggggttgtccgacgcagtcctcaagtctctgaaggatgtcggttacgaa
attccttccgctattcaggcagccacgatccccatcctccttgagggaaaggatgttgtt
ggtcttgcccagactggtaccggtaagaccgcagcttttgcactgcccattctttctcgc
ctggacctctctcagaagagcccacaggcccttgtactagctcctacccgtgaactcgca
ctccaggtctgtgaagctttcgagaagtatgcctcccacatgaagggcgtgcacgttctt
cctgtttatggtggccagggttatggcacccagctttctgcactgcgtcgtggagtccac
attgtggtgggaactcccggtcgcatcatggaccaccttcaaaagggaactcttgatctc
accgcgctgaagtacttagtcctcgatgaggcagatgaaatgctcaagatgggctttgct
gaggacgttgagacgatcctcgctgacacaccttcggacaagcaggtggcactgttctcg
gcaaccatgcctgcccagattcgccggatttcgaagcagtacctcaacgatcccgaagag
atcacgatcaagaacaagaccacaacctcttcgaccatcacgcagcgatacctcatggtc
tcctatccccaaaaggtggatgcgctcacccgcatcctcgaagttgaaaacttcgaaggc
atgatcatcttcacccgcaccaagaacgaaaccgagacgttggcagagaaactccgcgct
cgcggatactccgccatggcaattaatggtgacgttcctcaggccacgcgagagcgcacg
gttgaacagctcaagtccggcaagctcgacatcttggttgccaccgatgttgcagcacgt
ggtttggacgtcgaacgcattagccacgtggtcaactttgatattccgattgataccgag
tcttatgttcaccgcattggccgcaccggccgtgcgggacgcagcggagctgcaatcagc
ttcgttactccccgagagagcagactcctcaacgccatcgagcgcgcaacgcgtcagcca
ctgacccagatgcagctgccgagcgtggaagacgtcaacgtcacacgtctggctcgcttc
gacgatgccattactgaagcgctcgctcagccaaacctcattctccagttccgtgagatt
gttggccactacatcgaacaccacgatgttccagaagctgatgttgccgccgctcttgct
gttgttgctcagggtgacactcctcttctgctctctgcagaggacgagcgcgcacagcgt
tacgcacgtgaagagcagacccgcaaggaacgtgctgaacgtggtgaccgcggagaccga
ggtggtcgtaatgaccgaggtggtcgtaatgaccgcggtgaccggggcgatcgcggagac
cgcgggggacgtccttctcgggatgatcgctactctcgtgacgaccgcccaccccgtgag
cgtttcaaccgtgaggatcgcccagagcgtcgtccacgcgagagcaaccagcccatgtcc
tcttacagaattgaagtgggcaagcgacacaaggttgagcctcgccaaattgtgggtgct
cttgctaacgagggtggcctcagccgcgatgactttggcgcgatcaagattcttcccgat
cactccattgttgaacttcccgcaaacctcggaaatgatgttttcggcaggctcgaggga
acccgcatcagcggaaagctcatcgagcttcgtgctgacagctcttcctctgctcgtcgt
gacgatcgcgacgagcgcccagcacgcaagccacgtcactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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