KEGG   Azotobacter vinelandii CA6: AvCA6_47410
Entry
AvCA6_47410       CDS       T02634                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
avd  Azotobacter vinelandii CA6
Pathway
avd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:avd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AvCA6_47410 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:avd03021]
    AvCA6_47410 (rho)
   03019 Messenger RNA biogenesis [BR:avd03019]
    AvCA6_47410 (rho)
Transcription machinery [BR:avd03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AvCA6_47410 (rho)
Messenger RNA biogenesis [BR:avd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AvCA6_47410 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 NACHT
Other DBs
NCBI-ProteinID: AGK18664
UniProt: M9YDV0
Position
complement(4814252..4815511)
AA seq 419 aa
MNLTELKQKPITELLEMAEQMGLENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNARLTMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLELQLDRRVAEKRVFPAINI
NRSGTRREELLTGEEELQRMWILRKILHPMDEIAAIEFLLDRLKDTKTNEEFFQSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatctgaccgaactcaagcaaaagcctattaccgaactgctggaaatggccgaacag
atgggcctggagaacatggcccgttcgcgcaagcaggatgtgatcttctccctgctgaag
aagcatgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattcttcaggat
ggtttcggattcctgcgcagcgcggattcctcctatttggccgggccggacgacatctac
gtctcgccgagccagatccgccgcttcaacctgcgcaccggcgacaccatcgtcggcaag
atccgcccgccgaaggagggcgagcgctacttcgcgctgctcaaggtcgactcgatcaac
ttcgaccggccggaaaacgcgaagaacaagatcctcttcgaaaacctcaccccgctgttc
cccaatgctcgtctcaccatggaagccggcaacggctccaccgaagacctcaccggccgc
gtgatcgacctctgcgcgccgatcggcaagggccagcgtggcctgatcgtcgcgccgccg
aaggccggcaagacgatcatgctgcagaacatcgccagcaacatcacgcgcaacaatccc
gagtgtcacctgatcgtcctgctcatcgacgagcgtccggaagaggtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctccaccttcgacgagccgccgacccgccacgtg
caggtcgccgagatggtcatcgagaaggccaagcgcctggtcgaacacaagaaggacgtg
gtgattctgctcgactccatcacccgcctggcgcgcgcctacaacaccgtgatccccagc
tccggcaaggtactcaccggcggtgtcgacgcccatgcactggaaaagcccaagcgtttc
ttcggtgccgcgcgcaacatcgaggagggcggcagcctcaccatcctcgccactgcgctg
gtggaaaccggctcgaagatggacgaagtgatctacgaggagttcaagggtacgggcaac
ctggagctgcagctcgaccggcgcgtcgccgagaagcgtgtgttcccggcgatcaacatc
aatcgctccggtacccgccgcgaagaactcctgaccggtgaagaggaactgcagcgcatg
tggatcctgcgcaagatcctgcatcccatggacgagatcgccgccatcgaattcctgctc
gatcgtctgaaggataccaagaccaacgaggaattcttccagtcgatgaagcggaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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