KEGG   Aeromonas veronii TH0426: AMS64_17630
Entry
AMS64_17630       CDS       T04529                                 
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
avo  Aeromonas veronii TH0426
Pathway
avo03030  DNA replication
avo03410  Base excision repair
avo03420  Nucleotide excision repair
avo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:avo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AMS64_17630 (ligA)
   03410 Base excision repair
    AMS64_17630 (ligA)
   03420 Nucleotide excision repair
    AMS64_17630 (ligA)
   03430 Mismatch repair
    AMS64_17630 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:avo03032]
    AMS64_17630 (ligA)
   03400 DNA repair and recombination proteins [BR:avo03400]
    AMS64_17630 (ligA)
Enzymes [BR:avo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AMS64_17630 (ligA)
DNA replication proteins [BR:avo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AMS64_17630 (ligA)
DNA repair and recombination proteins [BR:avo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AMS64_17630 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AMS64_17630 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AMS64_17630 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AMS64_17630 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH DZR_2 zf-NADH-PPase
Other DBs
NCBI-ProteinID: AMQ44038
Position
complement(3859210..3861216)
AA seq 668 aa
MSDILSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSV
RVGGQPLTAFSQVRHEIPMLSLDNVFSSEELLAFEQRMSDRLKRDVRFEFCCEPKLDGLA
VSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLALRGSGWPDRLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGEQLGDSHFG
RLTQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPSSARAILFPTECPVCGSAVERLEGE
AVARCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLTVADVGEVVAKHVYYFLRQPHNVEVLEALLAAGIHWPAIERKEAAEQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLTKAQELGITIWTEE
ELQQALQG
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgagcgatatcctctcccgccaccgtcaattgtgtgaactgcttaccgaatatggtcac
cagtactatgtgctggataaccccacagtgccggatgccgaatacgatcgcctgatgcgc
gaactgattgcgctggaggccgagcatcccgagctgaaaacaccggcgtcacccagcgtg
cgggtcggcggccagccgctgacggcgttcagtcaggtgcgtcatgagatccccatgctc
agtctggataacgtctttagcagcgaagagctgctggcgtttgaacaacggatgagcgat
cgcctcaagcgtgacgtgcgtttcgagttttgctgcgagcccaagctcgacggcttggcg
gtgagcctgctctatgtggatggtcagctggtgcaggcggccacccggggcgatggcgcc
accggtgaggagatcaccgagaacgtgcgtaccatcaaggccattccgctcgcattgcgg
ggctctggctggcccgatcggctggaggtgcgtggcgaagtctttatgcccaaggccggt
tttgaggcgatgaacgccaaggcattggccgcgggcgagaaggtatttgtcaacccgcgc
aatgccgctgctggcagcctgcgtcaactcgattcacgtatcaccgccagccgtcccctg
agcttttacgcttacggtgtcggtgttggcggcgagcaactgggcgactcccactttggc
cgtctcacccagctcaaggagtgggggctgccgctcagtcccgaggtgaagctcaaagag
ggggccgccggttgtcaggcgttccatgacgacattctggcccgtcgtggcgagctccct
tatgagatcgacggcgtggtctacaaggtggatgccatccccctgcaggaagagctgggc
tttgtggcccgcgccccgcgctgggcgaccgcccacaagttcccggcgcaggaggagatg
acagagcttgagaacgtcgagtttcaggtcggccgcaccggcgccgtgaccccggtcgcc
aagctcaaacctgtgtttgttggcggcgtcaccgtctccaacgccactttgcacaatgct
gacgagattgagcgcctcggcgtgatgattggcgataccgtgatcgtgcgccgggcgggg
gatgtgatcccgcagatcgtcgccgtggtggaggcgcagcgcccaagcagtgcccgcgcg
atcctcttcccaaccgagtgtcctgtttgtggctcggcggtcgagcggttggaaggggag
gctgttgcccgttgctccggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cactttgccgcccgtcgcgccatggacgtggatggccttggtgacaagattgtcgagcag
ttggtggacaaggggctggtgaagaccccggccgatctgttcagccttaacgccatccag
ctggccggtcttgagcggatggggcaaaaatcggccctcaatctggtggccgccatcgat
gcggctcgcagtaccaccctgccgcgcttcctgtttgccctggggatccgcgaagtcggg
gaggcgaccgccctcaatctggccaaccacttcctcaccctggatgccctgcgcgctgcc
tcggtggagcaactgctgacggtggccgatgtgggcgaggtggtggccaagcatgtctac
tacttcctacgtcagccacacaacgtggaggtgctggaggccctgctggccgccggtatc
cactggcctgccatcgagaggaaggaagcggctgagcaaccctttgccggcaagaccttc
gtgctgaccggtacgctgaccaccctgtcgcgcaacgatgccaaggcggcactgcaggcg
ctgggggccaaggtggcgggttcggtatctgccaagaccgatgtgctggtcgcgggggaa
gcggccggttccaagctgaccaaggcgcaggagctcggcattaccatctggaccgaagag
gagctgcaacaggcgttgcagggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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