KEGG   Achromobacter xylosoxidans NBRC 15126 = ATCC 27061: AX27061_1850
Entry
AX27061_1850      CDS       T02964                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
axn  Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Pathway
axn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:axn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AX27061_1850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:axn03019]
    AX27061_1850
   03016 Transfer RNA biogenesis [BR:axn03016]
    AX27061_1850
Enzymes [BR:axn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AX27061_1850
Messenger RNA biogenesis [BR:axn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AX27061_1850
Transfer RNA biogenesis [BR:axn03016]
 Prokaryotic type
  tRNA degradation factors
   AX27061_1850
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3 Rrp44_S1
Other DBs
NCBI-ProteinID: AHC46315
Position
2023583..2025910
AA seq 775 aa
MELAERMGVERPATMVGFERRLGAMERDGQLMPNRKGVLLLATKLDFVAGKVLGHRDGFG
FLLRDDGGPDLFLSPREMLKVLHGDRVLVKPSGEYRGKPEGTIVEVIERRTNKLVGRFLH
EHGLSIVVPEDQRIKHDILIPPSDTNGAQHGQVVAVEIMEQPTRHTQPLGRVSEVLGEID
DPGMEIEIAVRKFDVPVEFSEAARKQAARLPDVVRKSDLKDRVDLRDVPLITIDGEDARD
FDDAVYCEAVELGTGQRKRPGWRLLVAIADVSHYVRPGDALDDDALERGTSVYFPRRVIP
MLPESLSNGLCSLNPDVDRLVLVCDMVIPASGAKAGTVTAYQFYNAVMHSHARTTYTNIW
AALQQPGGPAAHAMRAVMPQVQSLYELFHLLSQSRKKRGAIDFDTVETKIVCNELGRIEQ
IVPSVRNDAHKLIEECMLAANTCAADFMTRSKHPGLYRIHEGPTPERLQSLREFLRTMGL
SLGGGDTPTAKDYGDFLDSVRGRPDYQLLQTMCLRSMQQAIYSPDNLGHFGLSYPGYSHF
TSPIRRYPDLLTHRVIKALLAGQRYVPSLDDQPVVIGRTQREHEHAIWEKMGLVLSASER
RADEASRDVEAWLKCWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEY
FQFNDALHELRGERTGMRYRLTDKVQVQVSRVDLEARRIEFRLVQGTSFDALRKASARGP
DEGPRRVKKAAAPKPAALKGQTAKERRAEAKKAGKPSKVAQQRAAPAKKATRKRH
NT seq 2328 nt   +upstreamnt  +downstreamnt
gtggagttggccgagcgcatgggcgtggagcgtccggcgacgatggtgggattcgaacgc
cgcctgggcgcgatggagcgcgatggccaattgatgcccaatcgcaagggcgtgctgctg
ctggccaccaagctggacttcgtggcgggcaaggtgctgggccaccgcgacggtttcggc
ttcctgctgcgcgatgatggcgggccggacctgttcctgtcgccgcgcgaaatgctcaag
gtgctgcatggcgaccgcgtgctggtcaagccgtcgggcgaataccgcggcaagccggaa
ggcaccatcgtcgaagtcatcgagcgccgcaccaacaagctggtgggccgtttcctgcac
gagcacggcctgtccatcgtggtgccggaagaccagcgcatcaagcacgacatcctgatc
ccgcccagcgacaccaacggcgcccagcatgggcaggtggtggcggtcgagatcatggag
cagcccacccgccacacgcagccgctgggccgtgtgtccgaagtgttgggcgagatcgac
gatcccggcatggaaatcgagatcgcggtgcgcaagttcgacgtgcccgtcgaattctcc
gaggccgcgcgcaagcaggccgcccgcctgccggacgtggtccgcaagagtgacctgaaa
gaccgcgtcgacctgcgcgacgtgccgctcatcaccatcgacggcgaagacgcgcgcgat
ttcgacgatgccgtctactgcgaggcggtggaactgggcaccggccagcgcaagcggccg
ggctggcgcctgctggtggcgattgccgacgtcagccactacgtgcggcccggcgacgcg
ctggacgacgacgcgctcgagcgcggcaccagcgtgtatttcccgcgccgggtcattccg
atgctgcccgagtcgctgtccaatggcctgtgctcgctgaatccggacgtcgaccgcctg
gtgctggtgtgcgacatggtgattccggcctcgggcgccaaggccggcacggtcaccgcc
taccagttctacaacgcggtgatgcactcgcatgcccgcaccacctacaccaatatctgg
gcggcgctgcagcagcccggcggcccggcggcccatgccatgcgcgccgtcatgccgcag
gtgcagagcctgtatgaactgttccacctgctgtctcagagccgcaagaagcgcggcgcg
atcgatttcgacacggtcgagaccaagatcgtctgcaacgagctggggcgcatcgagcag
atcgtgccgtcggtgcgcaacgatgcccacaagctgatcgaggaatgcatgctggccgcc
aacacctgcgcggccgacttcatgacgcgcagcaagcatcccggcctgtaccgcatccat
gaaggcccgacgcccgagcgcctgcaatcgctgcgcgagttcctgcgcaccatgggcctg
tcgctgggcgggggcgatacgcccacggccaaggactacggcgatttcctcgattccgtg
cgcggtcgtcccgactaccagctgctccagaccatgtgcctgcgctcgatgcagcaggcc
atctacagtccggacaacctgggtcacttcggtctgtcgtatcccggctacagccacttc
acctcgcccatccggcgctatccggacctgctgacgcaccgcgtcatcaaggccctgctg
gcggggcagcgctacgtgcccagcctggacgaccagccggtcgtcatcggccgcacccag
cgcgagcatgagcacgccatctgggaaaagatgggcctggtgctgtcggccagcgagcgc
cgcgccgacgaggcctcgcgcgacgtcgaggcctggctcaagtgctggttcgtcaaggag
cgcgtgggcgaggacttcagcggcaccgtcaccggcgtggccagcttcggcatcttcgtc
acgctggatacgctgcacgtcgaagggctggtgcacgtgtccgagctgggcggcgagtac
ttccagttcaacgatgcgctgcacgagctgcgcggcgaacgcaccggtatgcgctaccgc
ctgaccgacaaggtccaggtgcaggtctcgcgcgtggacctggaggcgcgccgcatcgag
ttccgcctggtgcagggcaccagcttcgatgccttgcgcaaggcgtccgcgcgtggtccc
gacgagggtccgcgccgcgtgaagaaggcggcggcgcccaagccggccgcgctcaagggc
cagaccgccaaggagcggcgcgccgaggccaagaaggccggcaagccgtccaaggtcgcc
cagcagcgcgccgcgcctgccaagaaggccacgcgcaaacgccactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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