KEGG T01341: AXYL

Achromobacter xylosoxidans A8: AXYL_03254

Entry

AXYL_03254        CDS       T01341

Name

(GenBank) DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

axy Achromobacter xylosoxidans A8

Brite

KEGG Orthology (KO) [BR:axy00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:axy03032]
    AXYL_03254
   03400 DNA repair and recombination proteins [BR:axy03400]
    AXYL_03254
Enzymes [BR:axy01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     AXYL_03254
DNA replication proteins [BR:axy03032]
Prokaryotic type
  DNA Topoisomerases
   AXYL_03254
DNA repair and recombination proteins [BR:axy03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      AXYL_03254

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact

Other DBs

NCBI-ProteinID:

ADP16574

UniProt:

E3HGS4

Position

3506498..3507568

AA seq 356 aa
MNSSSQAPRRSGGAALVYYDDSRAGYTRARINGHAFHYLDARGKRIRSAREIKRIDALAI
PPAYEQVWICPSPLGHLQATGRDARGRKQYRYHPDWTAVRDASKYQSLADFAQTLPRIRR
QVERDLRTPGLSQNKVIAVLVRLLEATLVRIGAREYARANKSYGLTTLKRRHASVSGDRF
RFRFQGKSGVSHDVSAADRRVARVIKRCLDIPGQQLFQYLDEDGGSHPVDSGAVNAYLRA
AGRGDFTAKHYRTWAGSVMAYAALQSCPADDAAQAQKNVVEVVKQVARRLANTPAVCRAC
YVHPAILAAYLEGALPPAAAAPQAPRGLHPDERRLLAFLRAQAAAAAPAAQESKDR

NT seq 1071 nt +upstreamnt +downstreamnt
atgaactcaagctcccaagcgccccgcaggtccggcggcgcggcactggtctattacgac
gacagccgggcaggctatacgcgagcccgcatcaacggccacgccttccactacctggac
gcgcgcggcaagcggatacgcagtgcgcgggagatcaagcgcatcgatgccctggcgata
cctccggcctatgagcaggtatggatctgcccgtctccgcttgggcacctgcaggccacc
gggcgcgacgcgcgcggccgcaagcagtaccgctaccacccggactggaccgcggtgcgc
gacgcgagcaagtaccaaagccttgcagattttgcgcagacgctgccgcgcatccggcgc
caggtcgaacgtgatctgcgcacccccggcttatcccagaacaaggtgatagccgtactg
gtgcggctgctggaggcaaccctggtgcgcatcggcgcgcgcgaatacgcccgggccaac
aagtcctatggcctgaccaccctcaagcgccgccacgccagcgtcagcggcgaccgcttc
cgtttccgcttccagggcaagagcggcgtaagccacgacgtcagcgccgcggaccggcgc
gtggcgcgcgtcatcaagcgctgcctggacatccccggccagcagcttttccagtacctg
gacgaggatggcggcagccatccggtggactctggcgcggtcaatgcctatctgcgcgcg
gcgggccggggcgacttcacggcgaagcactaccggacctgggcaggttccgtcatggcc
tacgcggcgttgcagagctgtcccgccgacgacgccgcccaggcgcagaagaacgtggtg
gaagtggtcaaacaggtggcgcggcggctcgccaatacgcctgccgtgtgccgggcctgc
tatgtgcacccagccattctggccgcctatctggagggcgcgttgccaccagccgcggcc
gcgccacaagcgccccgcggcctgcacccggacgaacgccgcctgctggcctttttgcgg
gcgcaggccgctgcggcggcgccggccgctcaggaatcaaaggatcgatga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

Download RDF

DBGET integrated database retrieval system