KEGG   Azorhizobium caulinodans: AZC_0887
Entry
AZC_0887          CDS       T00609                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
azc  Azorhizobium caulinodans
Pathway
azc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:azc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AZC_0887
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:azc03021]
    AZC_0887
   03400 DNA repair and recombination proteins [BR:azc03400]
    AZC_0887
Enzymes [BR:azc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AZC_0887
Transcription machinery [BR:azc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AZC_0887
DNA repair and recombination proteins [BR:azc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AZC_0887
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: BAF86885
RhizoBase: AZC_0887
UniProt: A8HTY8
Position
987806..991936
AA seq 1376 aa
MAQTFTGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLQIEEPKGGRADDGLQAVFKSV
FPISDFSGAAMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTGAKSV
KDIKEQDVYTGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLFALGLDSEEILNTFYEKILYTRAK
DGWRMPFDPKRMKGYKAVADLIDADTGEVVVEAGKKLTVRAARQLVEKGLKALKISDDEM
VGQYIGEDIVNVHTGEIYAEAGEEITEKVLKTLGDAGFDEIPVLDIDHINTGAYIRNTLS
ADKNSSREEALFDIYRVMRPGEPPTLDSAQAMFHSLFFDAERYDLSAVGRVKMNMRLDLD
AEDTVRILRREDILAVIKTLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRME
RAIKERMSSVDIDTVMPQDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIEAPYR
RVVDGRVTDEVVYLSAMEEGKYYVAQANVPLDTDGRFQEDLVICRHAGDVLVVSPDRVDF
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRSQAPLVGTGMEAVVARDS
GAAIAARRAGVIDQVDATRIVIRATGETDPSKSGVDIYRLMKFQRSNQSTCINQRPLVRV
GDVVKKGDIIADGPSTELGELALGRNVLVAFMPWNGYNYEDSILLSENIVKEDVFTSIHI
EEFEAMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGES
PMTPEEKLLRAIFGEKAADVRDTSLRLPPGTTGTIVEVRVFNRHGVDKDERALAIEREEI
ERLAKDRDDEQAILDRNVYGRLSEMLVGKVAIAGPKAFKKDTEITKDALGEYPRSQWWLF
AVADDALMSELEAIRAQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTNVDIVLNPLGVPSRMNVGQILETHLGWA
CAGLGRQVAAAVDAYYGSKDQQVLRNALVKVYGPDDIEVLDEKQITELGENLRKGVPMAT
PVFDGAHEADIEEHLEKAGLNPSGQSTLFDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGEDTFESGIPESFNVLVKEMRSLGLNVELLNSKTGRQTNPGTRENLPAAE
NT seq 4131 nt   +upstreamnt  +downstreamnt
atggcgcaaacgttcaccggtcgcaagcggatccgcaaattcttcggcaagatcaaggaa
gtcgcagagatgccgaacctcatcgaggttcagaaggcgtcctatgaccagttcctgcag
atcgaagagccgaagggcggtcgcgcggacgacggtctccaggcagtgttcaagtcggtg
ttcccgatttccgacttctcgggcgctgcgatgctggagttcgtgcgctacgagttcgag
cccccgaagtatgacgtggacgagtgccgccagcgcggcatgacgtttgccgcgccgctg
aaggtgacgctgcgcctcatcgtgttcgatgtggatccggataccggcgccaagtcggtg
aaggacatcaaggagcaggacgtctacaccggcgacattccgctgatgaccatgaacggc
acgttcatcgtcaacggcacggagcgcgtcatcgtctcgcagatgcaccgctcgccgggc
gtgttcttcgatcacgacaagggcaagacccactcctcgggcaagctcctgttcgccgcc
cgcatcattccctatcgcggttcctggctcgacatcgagttcgacgccaaggacatcgtg
tatgcgcgcatcgaccgtcgccgcaagatcccggtgacgagcctgctgttcgccctcggc
ctcgattccgaggagattctgaacaccttctacgagaagatcctctacacccgcgcgaag
gacggctggcgcatgccgttcgatcccaagcggatgaagggctacaaggcggtcgccgac
ctcatcgacgccgacaccggcgaagtggtggtcgaggccggcaagaagctgaccgtgcgc
gccgcccgccagctcgtggagaagggcctcaaggccctcaagatctccgacgacgagatg
gtcggccagtacatcggcgaggacatcgtcaacgtccacaccggcgagatctatgccgag
gcgggcgaggagatcaccgagaaggtcctgaagaccctcggcgacgccggcttcgacgag
attccggtcctcgacatcgaccatatcaacaccggcgcctacatccgcaacacgctgtcg
gcggacaagaattcctcccgcgaggaagccctgttcgacatctaccgcgtgatgcgcccc
ggcgagcccccgacgctcgacagcgcccaggcgatgttccactcgctgttcttcgacgcc
gagcgctatgacctctccgcggtcggccgcgtgaagatgaacatgcgcctcgacctcgac
gccgaggacaccgtgcgcatcctgcgccgcgaggacatcctggccgtcatcaagacgctg
gtggagctgcgcgacggcaagggcgagatcgacgacatcgaccacctcggcaaccgccgt
gtgcgctcggtcggcgagctcatggagaaccagtaccgcgtcggtctgctgcgcatggag
cgcgccatcaaggagcgcatgtcgtccgtcgacatcgacaccgtgatgccgcaggacctc
atcaatgcgaagcccgtggcggctgcggtgcgcgagttcttcggctcctcccagctctcg
cagttcatggaccagaccaacccgctgtccgagatcacgcacaagcgtcgtctctcggcc
ctcggcccgggcggtctgacccgcgagcgcgccggcttcgaggtgcgcgacgtgcacccg
acgcattacggccgcatctgcccgatcgagacgccggaaggcccgaacatcggcctcatc
aactcgctggcgaccttcgcccgcgtgaacaagtacggcttcatcgaggcgccctaccgc
cgcgtcgtggacggccgggtcaccgacgaggtggtctatctctccgccatggaggagggg
aagtactacgtcgcgcaggccaacgtgccgctcgatacggacggccgcttccaggaagac
ctcgtgatctgccgccacgccggcgacgtgctcgtggtctccccggatcgcgtggacttc
atggacgtgtcgccgaagcagctcgtgtcggtggccgcggcgctcatcccgttccttgag
aacgacgacgcgaaccgcgcgctcatgggctcgaacatgcagcgtcaggccgtgccgctg
gtgcgctcgcaggcgccgctggtcgggacgggcatggaagcggtggtcgcccgcgactcg
ggcgccgccatcgccgcccgccgcgccggcgtcatcgaccaggtggacgcgacccgtatc
gtgatccgcgcgacgggcgagaccgacccgtcgaagtcgggcgtcgacatctatcgcctg
atgaagttccagcgctccaaccagtccacctgcatcaaccagcgtccgctggtgcgcgtg
ggcgacgtggtgaagaagggcgacatcatcgctgacggtccctcgaccgagctcggcgag
ctggcgctcggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaactacgaa
gactctattctcctctccgagaacatcgtgaaggaggacgtcttcacctcgatccatatc
gaggagttcgaggccatggcccgcgacacgaagctgggcccggaggaaatcacccgcgac
attccgaacgtctcggaagaagcgctgaagaacctcgacgaagccggcatcgtgtacatc
ggcgcggaagtccgcgccggcgacatcctggtgggcaagatcacccccaagggcgaaagc
ccgatgacgccggaagagaagcttctgcgcgccatcttcggtgagaaggccgccgacgtc
cgcgacacttcgctccgcctgcctccgggcacgacgggcacgatcgtggaagtgcgcgtg
ttcaaccgccacggcgtcgacaaggacgagcgtgcgctggccatcgagcgcgaggagatc
gagcgtctcgccaaggaccgcgacgacgagcaggcgatcctcgaccgcaacgtctacggc
cgtctctccgagatgctcgtgggcaaggtggccatcgccggcccgaaggctttcaagaag
gacaccgagatcaccaaggacgcgctgggtgagtatccccgctcgcagtggtggctgttc
gcggtggccgacgacgccctgatgagcgagcttgaggcgatccgcgcccagtatgacgag
tccaagaagcgccttgaacagcgcttcctggacaaggtcgagaagctgcagcgaggcgac
gaactgccccccggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaagatc
cagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcgcatcgtg
ccggtcgaggacatgccgttccttgaggacggcaccaatgtcgacatcgtgctgaacccg
ctcggcgtgccgagccgcatgaacgtcggccagatcctcgagacgcatctgggctgggcc
tgcgccggcctcggccgccaggtggcggctgcggtggacgcctattacggctccaaggac
cagcaggtcctgcgcaacgcgctcgtgaaggtctacggtccggacgacatcgaagtcctg
gacgagaagcagatcaccgagctcggcgaaaacctgcgcaagggtgtgcccatggccacc
ccggtcttcgacggcgcccacgaagcggacatcgaggagcatctggagaaggcggggctc
aacccctcgggccagtcgacgctcttcgacggccgcaccggcgagcccttcgaccgtaag
gtcaccgtcggctacatctacatgctgaagctgcaccatctcgtggacgacaagatccac
gcgcggtccatcggtccctactcgctcgtcacccagcagccgctgggcggtaaggcgcag
ttcggcggccagcgcttcggcgaaatggaggtgtgggcgctcgaggcttacggcgcggcg
tacacgctccaggagatgctcaccgtcaagtcggacgacgtggccggccgtaccaaggtg
tacgaggccatcgtccgcggcgaggacaccttcgagagcggcattccggagagcttcaac
gtgctcgtgaaggaaatgcgttcgctgggtctcaatgtggagctgctgaactccaagacc
gggcgccagaccaatcctggcacgcgtgagaatctgcccgcggccgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (61)   

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